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  "Type": "Package",
  "Title": "Visualise ChIP-seq, MNase-seq and motif occurrence as aggregate\nplots Summarised Over Grouped Genomic Intervals",
  "Version": "1.44.0",
  "Date": "2025-07-24",
  "Author": "Gopuraja Dharmalingam, Doug Barrows, Tom Carroll",
  "Maintainer": "Tom Carroll <tc.infomatics@gmail.com>",
  "Description": "The soGGi package provides a toolset to create genomic\ninterval aggregate/summary plots of signal or motif occurence\nfrom BAM and bigWig files as well as PWM, rlelist, GRanges and\nGAlignments Bioconductor objects. soGGi allows for\nnormalisation, transformation and arithmetic operation on and\nbetween summary plot objects as well as grouping and subsetting\nof plots by GRanges objects and user supplied metadata. Plots\nare created using the GGplot2 libary to allow user defined\nmanipulation of the returned plot object. Coupled together,\nsoGGi features a broad set of methods to visualise genomics\ndata in the context of groups of genomic intervals such as\ngenes, superenhancers and transcription factor binding events.",
  "biocViews": "Sequencing, ChIPSeq, Coverage",
  "License": "GPL (>= 3)",
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  "Date/Publication": "2026-04-28 12:41:09 UTC",
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        "c,ChIPprofile-method",
        "cbind,ChIPprofile-method",
        "rbind,ChIPprofile-method",
        "[[,ChIPprofile,ANY,missing-method"
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