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  "Description": "The stageR package allows automated stage-wise analysis of\nhigh-throughput gene expression data. The method is published\nin Genome Biology at\nhttps://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1277-0",
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      "topics": [
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    {
      "page": "getAdjustedPValues",
      "title": "Retrieve the stage-wise adjusted p-values.",
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        "getAdjustedPValues,stageR",
        "getAdjustedPValues,stageRTx",
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        "getAlpha,stageR",
        "getAlpha,stageRTx",
        "getAlpha,stageRTx-method"
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        "getPScreen,stageRTx",
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      "topics": [
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        "getResults,stageR",
        "getResults,stageRTx"
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    },
    {
      "page": "getSignificantGenes",
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      "topics": [
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        "getSignificantGenes,stageRTx"
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    },
    {
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      "topics": [
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        "getSignificantTx,stageR",
        "getSignificantTx,stageRTx"
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        "getTx2gene,stageRTx"
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        "stageWiseAdjustment,stageRTx",
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