{
  "_id": "6a1b04971d7bb097a0a028b2",
  "Package": "tracktables",
  "Type": "Package",
  "Title": "Build IGV tracks and HTML reports",
  "Version": "1.46.0",
  "Date": "2021-11-21",
  "Author": "Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang",
  "Maintainer": "Tom Carroll <tc.infomatics@gmail.com>",
  "Description": "Methods to create complex IGV genome browser sessions and\ndynamic IGV reports in HTML pages.",
  "biocViews": "Sequencing, ReportWriting",
  "VignetteBuilder": "knitr",
  "License": "GPL (>= 3)",
  "LazyLoad": "yes",
  "Collate": "'tracktablesFunctions.R'",
  "Config/pak/sysreqs": "libbz2-dev libicu-dev liblzma-dev libxml2-dev\nxz-utils zlib1g-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:40:06 UTC",
  "RemoteUrl": "https://github.com/bioc/tracktables",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "3cdc575898f146b1047be3e639ab6e4b9d321e76",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-30 10:42:24 UTC",
    "User": "root"
  },
  "MD5sum": "c0ee3f470dc47542a0c6a3d1b7fd5a5c",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "tracktables_1.46.0.tar.gz",
  "_fileid": "7e1489c75b9006a15bdb2a4b25b03add8cb4cb2d6d1feea2f50777db60157606",
  "_filesize": 475562,
  "_sha256": "7e1489c75b9006a15bdb2a4b25b03add8cb4cb2d6d1feea2f50777db60157606",
  "_created": "2026-05-30T10:42:24.000Z",
  "_published": "2026-05-30T15:39:03.159Z",
  "_jobs": [
    {
      "job": 78643370911,
      "time": 173,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7307670269"
    },
    {
      "job": 78643370881,
      "time": 230,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7307675636"
    },
    {
      "job": 78643370883,
      "time": 258,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7307678282"
    },
    {
      "job": 78643370893,
      "time": 141,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7309314539"
    },
    {
      "job": 78643370891,
      "time": 141,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7309315079"
    },
    {
      "job": 78641018858,
      "time": 266,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7307595699"
    },
    {
      "job": 78643370878,
      "time": 124,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7307665350"
    },
    {
      "job": 78643370885,
      "time": 143,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7307664554"
    },
    {
      "job": 78643370889,
      "time": 149,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7307665114"
    },
    {
      "job": 78643370886,
      "time": 144,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7307664674"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 4,
    "note": 11
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26680457052",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/tracktables",
  "_commit": {
    "id": "3cdc575898f146b1047be3e639ab6e4b9d321e76",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777380006
  },
  "_maintainer": {
    "name": "Tom Carroll",
    "email": "tc.infomatics@gmail.com",
    "login": "thomascarroll",
    "description": "Director of Bioinformatics Resource Center- The Rockefeller University",
    "uuid": 5750801
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "IRanges",
      "role": "Imports"
    },
    {
      "package": "GenomicRanges",
      "role": "Imports"
    },
    {
      "package": "XVector",
      "role": "Imports"
    },
    {
      "package": "Rsamtools",
      "role": "Imports"
    },
    {
      "package": "XML",
      "role": "Imports"
    },
    {
      "package": "tractor.base",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "RColorBrewer",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.47.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.46.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "sequencing",
    "reportwriting"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 634,
    "source": "https://www.bioconductor.org/packages/stats/bioc/tracktables"
  },
  "_searchresults": 48,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/tracktables.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "igvParam",
    "makebedtable",
    "MakeIGVSampleMetadata",
    "MakeIGVSession",
    "MakeIGVSessionXML",
    "maketracktable"
  ],
  "_datasets": [
    {
      "name": "Intervals",
      "title": "Example genomic intervals",
      "object": "Intervals",
      "file": "Intervals.rda",
      "class": [
        "GRanges"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "igvParam",
      "title": "Parameters for displaying bigwigs, bams and intervals in IGV",
      "topics": [
        "igvParam",
        "igvParam-class"
      ]
    },
    {
      "page": "Intervals",
      "title": "Example genomic intervals",
      "topics": [
        "Intervals"
      ]
    },
    {
      "page": "makebedtable",
      "title": "Make HTML pages for interval files or GRanges.",
      "topics": [
        "makebedtable"
      ]
    },
    {
      "page": "MakeIGVSampleMetadata",
      "title": "Make sample metadata file for use with IGV.",
      "topics": [
        "MakeIGVSampleMetadata"
      ]
    },
    {
      "page": "MakeIGVSession",
      "title": "Make IGV session XML and sample information file",
      "topics": [
        "MakeIGVSession"
      ]
    },
    {
      "page": "MakeIGVSessionXML",
      "title": "Make IGV session XML",
      "topics": [
        "MakeIGVSessionXML"
      ]
    },
    {
      "page": "maketracktable",
      "title": "Make HTML pages for IGV sessions (Tracktables Experiment Report)",
      "topics": [
        "maketracktable"
      ]
    }
  ],
  "_rundeps": [
    "BH",
    "BiocGenerics",
    "BiocParallel",
    "Biostrings",
    "bitops",
    "cli",
    "codetools",
    "cpp11",
    "crayon",
    "formatR",
    "futile.logger",
    "futile.options",
    "generics",
    "GenomicRanges",
    "glue",
    "IRanges",
    "lambda.r",
    "lifecycle",
    "magrittr",
    "ore",
    "RColorBrewer",
    "Rcpp",
    "reportr",
    "Rhtslib",
    "rlang",
    "RNifti",
    "Rsamtools",
    "S4Vectors",
    "Seqinfo",
    "shades",
    "snow",
    "stringi",
    "stringr",
    "tractor.base",
    "vctrs",
    "XML",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "tracktables.Rnw",
      "filename": "tracktables.pdf",
      "title": "Creating IGV HTML reports with tracktables",
      "engine": "knitr::knitr",
      "headings": [],
      "created": "2014-10-08 23:11:31",
      "modified": "2014-10-12 22:33:16",
      "commits": 2
    }
  ],
  "_score": 3.9822712330395684,
  "_indexed": false,
  "_nocasepkg": "tracktables",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/tracktables",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.46.0",
      "date": "2026-05-30T10:55:20.000Z",
      "distro": "noble",
      "commit": "3cdc575898f146b1047be3e639ab6e4b9d321e76",
      "fileid": "93d5f75211efc031ea81500b1e0ded0adaafe8dda9ce1d4316f0ea3b2a7e4488",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26680457052"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.46.0",
      "date": "2026-05-30T10:55:49.000Z",
      "distro": "noble",
      "commit": "3cdc575898f146b1047be3e639ab6e4b9d321e76",
      "fileid": "6c1a10625c7cdb35987c0038526c2e8e7d52e538a7c9c1d6698d0b27c87231eb",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26680457052"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.46.0",
      "date": "2026-05-30T15:37:59.000Z",
      "commit": "3cdc575898f146b1047be3e639ab6e4b9d321e76",
      "fileid": "ffbdeb3338b87911806bce6fb9d7900f57be5387044c840dafbcb7a99031b44e",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26680457052"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.46.0",
      "date": "2026-05-30T15:37:51.000Z",
      "commit": "3cdc575898f146b1047be3e639ab6e4b9d321e76",
      "fileid": "9e543c1eed2f311841da10a0f9e68ea0e1ca246d062a0639dad913ee4bd26ca7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26680457052"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.46.0",
      "date": "2026-05-30T10:54:44.000Z",
      "commit": "3cdc575898f146b1047be3e639ab6e4b9d321e76",
      "fileid": "81fd58a21a029e3ff3515f3571a79d5adf3fe266858f7d5622ccaeb940b0c282",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26680457052"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.46.0",
      "date": "2026-05-30T10:53:23.000Z",
      "commit": "3cdc575898f146b1047be3e639ab6e4b9d321e76",
      "fileid": "98866ed95861c1731644aafdccdc4bed6faf1a3932d9e8fb0328808de5b6a3bc",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26680457052"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.46.0",
      "date": "2026-05-30T10:53:29.000Z",
      "commit": "3cdc575898f146b1047be3e639ab6e4b9d321e76",
      "fileid": "20edb998486d3a442dde8e1cec7b32e9e7e5b2a6bda120b83aa5ac330f190156",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26680457052"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.46.0",
      "date": "2026-05-30T10:53:38.000Z",
      "commit": "3cdc575898f146b1047be3e639ab6e4b9d321e76",
      "fileid": "119888ab1163b713ee66905060d8f2b32ce01ad1f84a6f7d65cd32965077e352",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26680457052"
    }
  ]
}