{ "_id": "6ad1fe991b2e07a5b4dad145", "Package": "vbmp", "Type": "Package", "Title": "Variational Bayesian Multinomial Probit Regression", "Version": "1.80.0", "Author": "Nicola Lama , Mark Girolami\n", "Maintainer": "Nicola Lama ", "Description": "Variational Bayesian Multinomial Probit Regression with\nGaussian Process Priors. It estimates class membership\nposterior probability employing variational and sparse\napproximation to the full posterior. This software also\nincorporates feature weighting by means of Automatic Relevance\nDetermination.", "License": "GPL (>= 2)", "LazyLoad": "Yes", "URL": "http://bioinformatics.oxfordjournals.org/cgi/content/short/btm535v1", "biocViews": "Classification", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:32:28 UTC", "RemoteUrl": "https://github.com/bioc/vbmp", "RemoteRef": "RELEASE_3_23", "RemoteSha": "14204bfa53833184b98a9046ae0e596abe992e31", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-16 10:34:05 UTC", "User": "root" }, "_user": "bioc-release", "_type": "src", "_file": "vbmp_1.80.0.tar.gz", "_fileid": "https://r2.ropensci.org/a8e247d0a09347c3f64cef8ed1fd467f1a841ebc71e14240da51574e8ac00184", "_filesize": 1841469, "_sha256": "a8e247d0a09347c3f64cef8ed1fd467f1a841ebc71e14240da51574e8ac00184", "_expires": "2027-01-24T10:38:15.000Z", "_created": "2026-10-16T10:34:05.000Z", "_published": "2026-10-16T10:38:17.199Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38887800993", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 2, "warning": 5, "note": 18 }, "_upstream": "https://github.com/bioc/vbmp", "_commit": { "id": "14204bfa53833184b98a9046ae0e596abe992e31", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379548 }, "_maintainer": { "name": "Nicola Lama", "email": "nicola.lama@unina2.it" }, "_distro": "resolute", "_jobs": [ { "job": 116930744341, "time": 160, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "12041146642" }, { "job": 116930744496, "time": 211, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12040153786" }, { "job": 116930744459, "time": 156, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12040312640" }, { "job": 116930744412, "time": 111, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "12040991540" }, { "job": 116930744461, "time": 116, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "12040707421" }, { "job": 116929812697, "time": 150, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12040746615" }, { "job": 116930744406, "time": 81, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12040242434" }, { "job": 116930744513, "time": 64, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12039829177" }, { "job": 116930744638, "time": 84, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "12040127707" }, { "job": 116930744366, "time": 63, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12040901553" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "Biobase", "version": ">= 2.5.5", "role": "Suggests" }, { "package": "statmod", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.81.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.80.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "classification" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 477, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 592, "source": "https://www.bioconductor.org/packages/stats/bioc/vbmp" }, "_searchresults": 5, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/vbmp.html" ], "_realowner": "bioc", "_cranurl": false, "_releases": [ { "version": "1.2.0", "date": "2007-06-22" }, { "version": "1.3.0", "date": "2007-07-24" }, { "version": "1.12.0", "date": "2009-05-10" }, { "version": "1.14.0", "date": "2009-11-13" }, { "version": "1.16.0", "date": "2010-05-01" }, { "version": "1.18.0", "date": "2010-10-26" }, { "version": "1.20.0", "date": "2011-04-26" } ], "_exports": [ "covParams", "plotDiagnostics", "predClass", "predError", "predictCPP", "predLik", "vbmp" ], "_datasets": [ { "name": "BRCA12", "title": "BRCA tumour dataset", "object": "BRCA12", "file": "BRCA12.RData", "class": [ "ExpressionSet" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "BRCA12", "title": "BRCA tumour dataset", "topics": [ "BRCA12" ] }, { "page": "covParams", "title": "VBMP covariance functions parameters", "topics": [ "covParams" ] }, { "page": "lowerBound", "title": "VBMP Lower bound estimate", "topics": [ "lowerBound" ] }, { "page": "plotDiagnostics", "title": "VBMP covariance diagnostics plot", "topics": [ "plotDiagnostics" ] }, { "page": "predClass", "title": "VBMP Predicted class values", "topics": [ "predClass" ] }, { "page": "predError", "title": "Out-of-Sample VBMP Prediction error", "topics": [ "predError" ] }, { "page": "predictCPP", "title": "VBMP predict functions parameters", "topics": [ "predictCPP" ] }, { "page": "predLik", "title": "VBMP predictive likelihood estimate", "topics": [ "predLik" ] }, { "page": "vbmp", "title": "Variational Bayesian Multinomial Probit Regression with Gaussian Process Priors.", "topics": [ "vbmp" ] } ], "_rundeps": [], "_vignettes": [ { "source": "vbmp.Rnw", "filename": "vbmp.pdf", "title": "vbmp Tutorial", "engine": "utils::Sweave", "headings": [], "created": "2013-11-01 20:01:26", "modified": "2013-11-01 20:01:26", "commits": 1 } ], "_score": 3.3010299956639813, "_indexed": false, "_nocasepkg": "vbmp", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/vbmp", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.80.0", "date": "2026-10-16T10:37:42.000Z", "distro": "resolute", "commit": "14204bfa53833184b98a9046ae0e596abe992e31", "fileid": "https://r2.ropensci.org/be43927c258c050af20c3e6752a8cdf420dd7f9020f0ee0558dca71cd46e78cb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38887800993" }, { "r": "4.6.1", "os": "linux", "version": "1.80.0", "date": "2026-10-16T10:36:48.000Z", "distro": "resolute", "commit": "14204bfa53833184b98a9046ae0e596abe992e31", "fileid": "https://r2.ropensci.org/fe502868d5db904e149d7f16f519392bc331137ba1efed3d938a7f93f682a583", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38887800993" }, { "r": "4.5.3", "os": "mac", "version": "1.80.0", "date": "2026-10-16T10:36:07.000Z", "commit": "14204bfa53833184b98a9046ae0e596abe992e31", "fileid": "https://r2.ropensci.org/ac0aa02abb123b6835cd5160de0602629b7207d02e9a353d10e6b1ac7672ec8c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38887800993" }, { "r": "4.6.1", "os": "mac", "version": "1.80.0", "date": "2026-10-16T10:36:07.000Z", "commit": "14204bfa53833184b98a9046ae0e596abe992e31", "fileid": "https://r2.ropensci.org/2be119cdec80bf88adc487d975eacd5be103564366c4a67ffbd7d847c9d9dd39", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38887800993" }, { "r": "4.6.0", "os": "wasm", "version": "1.80.0", "date": "2026-10-16T10:35:42.000Z", "commit": "14204bfa53833184b98a9046ae0e596abe992e31", "fileid": "https://r2.ropensci.org/93f06477892fcac9575cb88990c51d33b5c76f4c50be5898960fef29e84b26cf", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38887800993" }, { "r": "4.7.0", "os": "win", "version": "1.80.0", "date": "2026-10-16T10:35:12.000Z", "commit": "14204bfa53833184b98a9046ae0e596abe992e31", "fileid": "https://r2.ropensci.org/ad2eceec849632f59822a2e96b80f90cb2c1874c564437e1ff97bab489994d8a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38887800993" }, { "r": "4.5.3", "os": "win", "version": "1.80.0", "date": "2026-10-16T10:35:30.000Z", "commit": "14204bfa53833184b98a9046ae0e596abe992e31", "fileid": "https://r2.ropensci.org/1b7c0a5b70ae12e4322ad827b399b2e6e03fb16a11514f8932ca5b43338feaa1", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38887800993" }, { "r": "4.6.1", "os": "win", "version": "1.80.0", "date": "2026-10-16T10:35:06.000Z", "commit": "14204bfa53833184b98a9046ae0e596abe992e31", "fileid": "https://r2.ropensci.org/114fdb68e793a51f0edf04ac9bb6802d34a49f874abe28b0a9ab48919d3d5cc1", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38887800993" } ] }