{ "_id": "6aca1bd2fe5cc25786e84ba8", "Package": "yeastGSData", "Title": "Yeast Gold Standard Data", "Version": "0.50.0", "Author": "R. Gentleman", "Description": "A collection of so-called gold (and other) standard data\nsets", "biocViews": "ExperimentData, Saccharomyces_cerevisiae_Data", "Maintainer": "R. Gentleman ", "License": "Artistic-2.0", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:22:51 UTC", "RemoteUrl": "https://github.com/bioc/yeastGSData", "RemoteRef": "RELEASE_3_23", "RemoteSha": "9da88cc6a818f966377d66662ceaf76557e1e6ab", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 11:00:20 UTC", "User": "root" }, "_user": "bioc-release", "_type": "src", "_file": "yeastGSData_0.50.0.tar.gz", "_fileid": "https://r2.ropensci.org/1d832142bdab7c325f27eff54da8b3f24e9949e85bcbcae8aaed50a2b8b85b9f", "_filesize": 8351226, "_sha256": "1d832142bdab7c325f27eff54da8b3f24e9949e85bcbcae8aaed50a2b8b85b9f", "_expires": "2027-01-18T11:04:47.000Z", "_created": "2026-10-10T11:00:20.000Z", "_published": "2026-10-10T11:04:50.113Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046744214", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 2, "warning": 1, "note": 6 }, "_upstream": "https://github.com/bioc/yeastGSData", "_commit": { "id": "9da88cc6a818f966377d66662ceaf76557e1e6ab", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777378971 }, "_maintainer": { "name": "R. Gentleman", "email": "rgentlem@fhcrc.org" }, "_distro": "resolute", "_jobs": [ { "job": 114198308476, "time": 110, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11666749755" }, { "job": 114198308493, "time": 156, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11666749800" }, { "job": 114198308490, "time": 161, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11668141150" }, { "job": 114197775374, "time": 186, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11668380564" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "0.51.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "0.50.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimentdata", "saccharomyces_cerevisiae_data", "datapkg" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 0, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/yeastGSData.html" ], "_cranurl": false, "_exports": [], "_datasets": [ { "name": "BayesFactorNGS", "title": "The Binary Negative Gold Standard Developed via Bayes Factor", "object": "BayesFactorNGS", "file": "BayesFactorNGS.rda", "class": [ "data.frame" ], "fields": [ "Orf1", "Orf2", "Tested", "Observed", "log_BF" ], "rows": 7739, "table": true, "tojson": true }, { "name": "BayesFactorPGS", "title": "The Binary Positive Gold Standard Developed via Bayes Factor", "object": "BayesFactorPGS", "file": "BayesFactorPGS.rda", "class": [ "data.frame" ], "fields": [ "Orf1", "Orf2", "Tested", "Observed", "log_BF" ], "rows": 10200, "table": true, "tojson": true }, { "name": "BinaryGS", "title": "The Binary Gold Standard Data set Reported by Yu et al", "object": "BinaryGS", "file": "BinaryGS.rda", "class": [ "data.frame" ], "fields": [ "ORF1", "ORF2" ], "rows": 1318, "table": true, "tojson": true }, { "name": "MIPSGS", "title": "MIPS Gold Standard Protein Interactions", "object": "MIPSGS", "file": "MIPSGS.rda", "class": [ "data.frame" ], "fields": [ "ORF1", "ORF2", "CID", "NAME", "NUMBER" ], "rows": 8617, "table": true, "tojson": true }, { "name": "Mpact", "title": "Protein Interaction Data from Mpact", "object": "Mpact", "file": "Mpact.rda", "class": [ "matrix", "array" ], "fields": [ "ORF1", "GENE1", "ORF2", "GENE2", "DESCR", "REF", "EVI" ], "rows": 15456, "table": true, "tojson": true }, { "name": "MpactEvidenceCodes", "title": "MIPS Evidence Codes", "object": "MpactEvidenceCodes", "file": "MpactEvidenceCodes.rda", "class": [ "character" ], "fields": [], "table": false, "tojson": true }, { "name": "NEGGS", "title": "A Gold Standard for Negative Interactions", "object": "NEGGS", "file": "NEGGS.rda", "class": [ "data.frame" ], "fields": [ "ORF1", "ORF2", "LOC1", "LOC2" ], "rows": 2708746, "table": true, "tojson": true }, { "name": "POSPS", "title": "A Platinum Standard Data Set", "object": "POSPS", "file": "POSPS.rda", "class": [ "data.frame" ], "fields": [ "ORF1", "ORF2" ], "rows": 1867, "table": true, "tojson": true }, { "name": "PRS", "title": "The Positive Reference Set Reported by Yu et al", "object": "PRS", "file": "PRS.rda", "class": [ "data.frame" ], "fields": [ "ORF1", "ORF2" ], "rows": 188, "table": true, "tojson": true } ], "_help": [ { "page": "BayesFactorNGS", "title": "The Binary Negative Gold Standard Developed via Bayes Factor", "topics": [ "BayesFactorNGS" ] }, { "page": "BayesFactorPGS", "title": "The Binary Positive Gold Standard Developed via Bayes Factor", "topics": [ "BayesFactorPGS" ] }, { "page": "BinaryGS", "title": "The Binary Gold Standard Data set Reported by Yu et al", "topics": [ "BinaryGS" ] }, { "page": "MIPSGS", "title": "MIPS Gold Standard Protein Interactions", "topics": [ "MIPSGS" ] }, { "page": "Mpact", "title": "Protein Interaction Data from Mpact", "topics": [ "Mpact" ] }, { "page": "MpactEvidenceCodes", "title": "MIPS Evidence Codes", "topics": [ "MpactEvidenceCodes" ] }, { "page": "NEGGS", "title": "A Gold Standard for Negative Interactions", "topics": [ "NEGGS" ] }, { "page": "POSPS", "title": "A Platinum Standard Data Set", "topics": [ "POSPS" ] }, { "page": "PRS", "title": "The Positive Reference Set Reported by Yu et al", "topics": [ "PRS" ] } ], "_rundeps": [], "_score": 2.3010299956639813, "_indexed": false, "_nocasepkg": "yeastgsdata", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/yeastGSData", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.50.0", "date": "2026-10-10T11:03:56.000Z", "distro": "resolute", "commit": "9da88cc6a818f966377d66662ceaf76557e1e6ab", "fileid": "https://r2.ropensci.org/1024348b2180fdd77c8754708c2da32604d2c34cfd8ee7371adbca6c30884948", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046744214" }, { "r": "4.6.1", "os": "linux", "version": "0.50.0", "date": "2026-10-10T11:03:48.000Z", "distro": "resolute", "commit": "9da88cc6a818f966377d66662ceaf76557e1e6ab", "fileid": "https://r2.ropensci.org/cfcd58bb2d172137707a5f514ad93365868e37c56cf66b6360bdf781e6722c8a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046744214" } ] }