Package: asuri 1.0.0

Alberto Berral-Gonzalez

asuri: Analysis of SUrvival and RIsk prediction in patients based on gene signatures

The ASURI (Analysis of SUrvival and patients RIsk prediction based on gene signatures) package discovers marker genes that are related to risk prediction capabilities and to a clinical variable of interest. It uses two main steps, including subsampling glmnet and unicox. The package implements robust functions to discover survival markers related to a clinical phenotype and to predict a risk score, allowing to study the patient's risk based on the gene signatures. Several plots are provided to visualise the relevance of the genes, the risk score, and patient stratification, as well as a robust version of the Kaplan-Meier curves.

Authors:Alberto Berral-Gonzalez [aut, cre, ctb], María Sanchez-Martin [aut, ctb], Santiago Bueno-Fortes [aut, ctb], Natalia Alonso-Moreda [aut, ctb], Jose Manuel Sanchez-Santos [aut, ctb], Manuel Martin-Merino Acera [aut, ctb], Javier De Las Rivas [aut, ctb]

asuri_1.0.0.tar.gz
asuri_1.0.0.zip(r-4.7)asuri_1.0.0.zip(r-4.6)asuri_1.0.0.zip(r-4.5)
asuri_1.0.0.tgz(r-4.6-any)asuri_1.0.0.tgz(r-4.5-any)
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asuri_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
asuri/json (API)
NEWS

# Install 'asuri' in R:
install.packages('asuri', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jdelasrivas-lab/asuri/issues

Datasets:

On BioConductor:asuri-1.1.0(bioc 3.24)asuri-1.0.0(bioc 3.23)

softwarestatisticalmethodworkflowstepgeneexpressionmicroarraydifferentialexpressiongenepredictionregressionsurvivalexonarraymultiplecomparison

4.74 score 144 downloads 13 exports 91 dependencies

Last updated from:9c8ad9790f (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE210
linux-devel-x86_64NOTE489
source / vignettesOK338
linux-release-x86_64NOTE568
macos-release-arm64NOTE236
macos-oldrel-arm64NOTE236
windows-develNOTE530
windows-releaseNOTE509
windows-oldrelNOTE500
wasm-releaseOK162

Exports:genePhenogeneSurvpatientRiskplotBetasplotBoxplotplotKMplotLambdaplotLogRankplotProbClassplotSigmoidpredict_PatientRiskpredict_SurvCurveprefilterSAM

Dependencies:abindaskpassassertthatBiobaseBiocGenericsbitopsbootstrapcaToolsclassclicodetoolscpp11crayoncurldata.tableDelayedArraydiagramdigestfarverforeachfuturefuture.applygenericsGenomicRangesggplot2glmnetglobalsgluegplotsgtablegtoolshttripredIRangesisobanditeratorsjsonliteKernSmoothlabelinglatticelavalifecyclelistenvlubridatemagrittrMASSMatrixMatrixGenericsmatrixStatsmimemulttestnnetnumDerivopensslparallellyprodlimprogressrR6rbibutilsRColorBrewerRcppRcppEigenRdpackrlangrmetaROCRrpartS4ArraysS4VectorsS7scalesscrimeSeqinfoshapesiggenesSparseArrayspsUtilSQUAREMstringistringrSummarizedExperimentSuppDistssurvcompsurvivalsurvivalROCsystimechangevctrsviridisLitewithrXVector

ASURI: An R Package for Survival Analysis and Risk Prediction using Gene Expression

Alberto Berral-Gonzalez, Santiago Bueno-Fortes, Natalia Alonso-Moreda, Jose Manuel Sanchez-Santos, Manuel Martin-Merino, Javier De Las Rivas

Rendered fromasuri.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2026-03-18
Started: 2025-04-24