Version: 2.1.1
Text: bug fix in texpr, eexpr, iexpr, and gexpr methods; they no longer
        crash with single-replicate objects

Version: 2.1.1
Text: Small documentation clarifications

Version: 1.99.6
Text:

Version: 1.99.6
Text: bug fix in constructor: objects are now constructed correctly
        when only one sample is included in the object.

Version: 1.99.5
Text: clarification of docs/warning messages when "time" variable has
        too few timepoints to fit natural splines

Version: 1.99.5
Text: bug fix in subset function: factor levels that don't appear in
        subset pData are now dropped

Version: 1.99.4
Text: bug fix in plotting of single-transcript genes

Version: 1.99.3
Text: unit test update due to changes in findOverlaps

Version: 1.99.2
Text: bug fix: "ballgown" function now handles case when input feature
        names include quotes (').

Version: 1.99.1
Text: Bioconductor 3.0 release. Version 0.99.7 is released as version
        1.0.0.

Version: 0.99.7
Text: new methods for accessing gene and transcript names and IDs

Version: 0.99.7
Text: development package (on GitHub) now has Travis CI integration, so
        the package's is built/tested with every new push and a status
        image is visible on the package README

Version: 0.99.6
Text: ballgownrsem can now handle gzipped input files

Version: 0.99.6
Text: small fixes to eliminate warnings/errors on R CMD CHECK

Version: 0.99.5
Text: "subset" function now behaves appropriately if sampleNames
        contain "dot" characters

Version: 0.99.4
Text: Tablemaker source code moved out of Ballgown repository (both
        GitHub and BioC svn repos)

Version: 0.99.3
Text: `exprfilter` function added

Version: 0.99.2
Text: `ballgownrsem` function added (now compatible with RSEM output)

Version: 0.99.2
Text: RSEM slot added to ballgown S4 class

Version: 0.99.2
Text: bug fixes in `subset` function

Version: 0.99.2
Text: library size adjustment in `stattest` is now CSS normalization
        (using *log* FPKM) by default and is more customizable

Version: 0.99.1
Text:

Version: 0.99.0
Text: "meas" argument added to constructor function

Version: 0.99.0
Text: unit tests added

Version: 0.99.0
Text: vignette updated

Version: 0.99.0
Text: several bug fixes in plotting functions and statistical testing
        function Alpha release, 30 March 2014:

Version: 0.99.0
Text: package announced