To cite package ‘ballgown’ in publications use:

Fu J, Frazee AC, Collado-Torres L, Jaffe AE, Leek JT (2026). ballgown: Flexible, isoform-level differential expression analysis. R package version 2.44.0, https://bioconductor.org/packages/ballgown.

Corresponding BibTeX entry:

  @Manual{,
    title = {ballgown: Flexible, isoform-level differential expression
      analysis},
    author = {Jack Fu and Alyssa C. Frazee and Leonardo Collado-Torres
      and Andrew E. Jaffe and Jeffrey T. Leek},
    year = {2026},
    note = {R package version 2.44.0},
    url = {https://bioconductor.org/packages/ballgown},
  }