Package: barbieQ 1.4.0

Liyang Fei

barbieQ: Analyze Barcode Data from Clonal Tracking Experiments

The barbieQ package provides a series of robust statistical tools for analysing barcode count data generated from cell clonal tracking (i.e., lineage tracing) experiments. In these experiments, an initial cell and its offspring collectively form a clone (i.e., lineage). A unique barcode sequence, incorporated into the DNA of the inital cell, is inherited within the clone. This one-to-one mapping of barcodes to clones enables clonal tracking of their behaviors. By counting barcodes, researchers can quantify the population abundance of individual clones under specific experimental perturbations. barbieQ supports barcode count data preprocessing, statistical testing, and visualization.

Authors:Liyang Fei [aut, cre]

barbieQ_1.4.0.tar.gz
barbieQ_1.4.0.zip(r-4.7)barbieQ_1.4.0.zip(r-4.6)barbieQ_1.4.0.zip(r-4.5)
barbieQ_1.4.0.tgz(r-4.6-any)barbieQ_1.4.0.tgz(r-4.5-any)
barbieQ_1.4.0.tar.gz(r-4.7-any)barbieQ_1.4.0.tar.gz(r-4.6-any)
barbieQ_1.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
barbieQ/json (API)
NEWS

# Install 'barbieQ' in R:
install.packages('barbieQ', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/oshlack/barbieq/issues

Datasets:

On BioConductor:barbieQ-1.5.0(bioc 3.24)barbieQ-1.4.0(bioc 3.23)

sequencingsoftwareregressionpreprocessingvisualization

4.00 score 1 stars 4 scripts 255 downloads 14 exports 104 dependencies

Last updated from:451e33f73a (on RELEASE_3_23). Checks:7 NOTE, 2 OK, 1 ERROR. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE222
linux-devel-x86_64NOTE354
source / vignettesOK423
linux-release-x86_64NOTE352
macos-release-arm64NOTE194
macos-oldrel-arm64NOTE220
windows-develNOTE250
windows-releaseNOTE267
windows-oldrelERROR305
wasm-releaseOK154

Exports:clusterCorrelatingBarcodescreateBarbieQplotBarcodeHeatmapplotBarcodeMAplotBarcodePairCorrelationplotBarcodeParetoplotBarcodeProportionplotBarcodePValueplotBarcodeSankeyplotSamplePairCorrelationplotSignifBarcodeHeatmapplotSignifBarcodeProportiontagTopBarcodestestBarcodeSignif

Dependencies:abindbackportsBiobaseBiocGenericsbitbit64bootbroomcirclizeclicliprclueclustercodetoolscolorspaceComplexHeatmapcpp11crayondata.tableDelayedArraydigestdoParalleldplyrfarverforcatsforeachformula.toolsgenericsGenomicRangesGetoptLongggplot2glmnetGlobalOptionsgluegtablehavenhmsigraphIRangesisobanditeratorsjomolabelinglatticelifecyclelimmalme4logistfmagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmiceminqamitmlnlmenloptrnnetnumDerivoperator.toolsordinalpanpillarpkgconfigpngprettyunitsprogresspurrrR6rbibutilsRColorBrewerRcppRcppEigenRdpackreadrreformulasrjsonrlangrpartS4ArraysS4VectorsS7scalesSeqinfoshapeSparseArraystatmodstringistringrSummarizedExperimentsurvivaltibbletidyrtidyselecttzdbucminfutf8vctrsviridisLitevroomwithrXVector

barbieQ: An R package for analysing barcode count data from clonal tracking experiments

Rendered frombarbieQ.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2025-04-24
Started: 2024-11-29