Package: bayNorm 1.30.0

Wenhao Tang

bayNorm: Single-cell RNA sequencing data normalization

bayNorm is used for normalizing single-cell RNA-seq data.

Authors:Wenhao Tang [aut, cre], Fran<U+00E7>ois Bertaux [aut], Philipp Thomas [aut], Claire Stefanelli [aut], Malika Saint [aut], Samuel Marguerat [aut], Vahid Shahrezaei [aut]

bayNorm_1.30.0.tar.gz
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bayNorm_1.30.0.tgz(r-4.6-x86_64)bayNorm_1.30.0.tgz(r-4.6-arm64)bayNorm_1.28.0.tgz(r-4.5-x86_64)bayNorm_1.28.0.tgz(r-4.5-arm64)
bayNorm_1.30.0.tar.gz(r-4.7-arm64)bayNorm_1.30.0.tar.gz(r-4.7-x86_64)bayNorm_1.30.0.tar.gz(r-4.6-arm64)bayNorm_1.30.0.tar.gz(r-4.6-x86_64)
bayNorm_1.30.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
bayNorm/json (API)
NEWS

# Install 'bayNorm' in R:
install.packages('bayNorm', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/wt215/baynorm/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:

On BioConductor:bayNorm-1.31.0(bioc 3.24)bayNorm-1.30.0(bioc 3.23)

immunooncologynormalizationrnaseqsinglecellsequencingscrnaseqcppopenmp

6.58 score 10 stars 42 scripts 464 downloads 3 mentions 17 exports 40 dependencies

Last updated from:4b9372357f (on RELEASE_3_23). Checks:9 NOTE, 2 OK, 3 FAIL. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE208
linux-devel-arm64NOTE296
linux-devel-x86_64NOTE321
source / vignettesOK282
linux-release-arm64NOTE280
linux-release-x86_64NOTE316
macos-release-arm64NOTE301
macos-release-x86_64NOTE464
macos-oldrel-arm64FAIL82
macos-oldrel-x86_64FAIL146
windows-develNOTE260
windows-releaseNOTE280
windows-oldrelFAIL116
wasm-releaseOK159

Exports:AdjustSIZE_funas_matrixasMatrixbayNormbayNorm_supBB_FunBetaFunCheck_inputDownSamplingEstPriorEstPrior_rcppEstPrior_sprcppNOISY_FUNnoisy_gene_detectionPrior_funSyntheticControlt_sp

Dependencies:abindBBBHBiobaseBiocGenericsBiocParallelcodetoolscpp11DelayedArraydoSNOWfitdistrplusforeachformatRfutile.loggerfutile.optionsgenericsGenomicRangesIRangesiteratorslambda.rlatticelocfitMASSMatrixMatrixGenericsmatrixStatsquadprogRcppRcppArmadilloRcppProgressrlangS4ArraysS4VectorsSeqinfoSingleCellExperimentsnowSparseArraySummarizedExperimentsurvivalXVector

Introduction to bayNorm

Wenhao Tang, Fran<U+00E7>ois Bertaux, Philipp Thomas, Claire Stefanelli, Malika Saint, Samuel Marguerat, Vahid Shahrezaei

Rendered frombayNorm.Rmdusingknitr::rmarkdownon Jun 04 2026.

Last update: 2019-03-26
Started: 2017-12-11