Package: biocthis 1.22.0

Leonardo Collado-Torres

biocthis: Automate package and project setup for Bioconductor packages

This package expands the usethis package with the goal of helping automate the process of creating R packages for Bioconductor or making them Bioconductor-friendly.

Authors:Leonardo Collado-Torres [aut, cre], Marcel Ramos [ctb]

biocthis_1.22.0.tar.gz
biocthis_1.22.0.zip(r-4.7-any)biocthis_1.22.0.zip(r-4.6-any)biocthis_1.22.0.zip(r-4.5-any)
biocthis_1.22.0.tgz(r-4.6-any)biocthis_1.22.0.tgz(r-4.5-any)
biocthis_1.22.0.tar.gz(r-4.7-any)biocthis_1.22.0.tar.gz(r-4.6-any)
biocthis_1.22.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
biocthis/json (API)

# Install 'biocthis' in R:
install.packages('biocthis', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lcolladotor/biocthis/issues

On BioConductor:biocthis-1.23.0(bioc 3.24)biocthis-1.22.0(bioc 3.23)

softwarereportwritingactionsbioconductorbiocthisgithubstylerusethis

7.76 score 56 stars 1 packages 5 scripts 1.3k downloads 23 exports 38 dependencies

Last updated from:6145b67f6c (on RELEASE_3_23). Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING151
linux-develNOTE261
source / vignettesOK309
linux-releaseNOTE337
macos-releaseNOTE116
macos-oldrelNOTE83
windows-develNOTE211
windows-releaseNOTE245
windows-oldrelNOTE98
wasm-releaseOK140

Exports:bioc_stylebiocthis_example_pkguse_bioc_badgesuse_bioc_build_badgeuse_bioc_citationuse_bioc_cocuse_bioc_dependencies_badgeuse_bioc_descriptionuse_bioc_feature_request_templateuse_bioc_github_actionuse_bioc_history_badgeuse_bioc_issue_templateuse_bioc_last_commit_badgeuse_bioc_news_mduse_bioc_pkg_templatesuse_bioc_pkgdown_cssuse_bioc_rank_badgeuse_bioc_readme_rmduse_bioc_supportuse_bioc_support_badgeuse_bioc_vignetteuse_tiny_testuse_tinytest

Dependencies:askpassBiocManagerclicliprcrayoncredentialscurldescdigestfsgertgitcredsgluehttr2inijsonlitelifecyclemagrittropensslpakpurrrR.cacheR.methodsS3R.ooR.utilsR6rappdirsrlangrprojrootrstudioapistylersysusethisvctrswhiskerwithryamlzip

biocthis developer notes
Basics | Backstory | Styling code | GitHub Actions | Motivation | Developing a Bioconductor-friendly GHA workflow | Potential future additions | Wrapping up | usethis-like functions | Acknowledgments | Reproducibility | Bibliography
Rendered frombiocthis_dev_notes.Rmdusingknitr::rmarkdown

Last update: 2023-03-03
Started: 2020-05-09

Introduction to biocthis
Basics | Install biocthis | Required knowledge | Asking for help | Citing biocthis | Quick start to using to biocthis | Using biocthis in your R package | biocthis functions overview | use_bioc_badges() | bioc_style() | use_bioc_citation() | use_bioc_description() | use_bioc_feature_request_template() | use_bioc_github_action() | Getting started | Main GHA workflow features | Additional features | Configure options | Automatically scheduled tests | Notes about GHA workflows | use_bioc_issue_template() | use_bioc_news_md() | use_bioc_pkg_templates() | use_bioc_pkgdown_css() | use_bioc_readme_rmd() | use_bioc_support() | use_bioc_vignette() | Acknowledgments | Reproducibility | Bibliography
Rendered frombiocthis.Rmdusingknitr::rmarkdown

Last update: 2022-11-01
Started: 2020-04-29

Readme and manuals

Help Manual

Help pageTopics
Add Bioconductor README badgesbioc_badges use_bioc_badges use_bioc_build_badge use_bioc_dependencies_badge use_bioc_history_badge use_bioc_last_commit_badge use_bioc_rank_badge use_bioc_support_badge
Tidyverse style made Bioconductor-friendlybioc_style
Create a temporary example packagebiocthis_example_pkg
Create a biocthis-style CITATION templateuse_bioc_citation
Create a Bioconductor-styled code of conductuse_bioc_coc
Create a biocthis-style DESCRIPTION templateuse_bioc_description
Create a biocthis-style GitHub feature request templateuse_bioc_feature_request_template
Create a biocthis-style GitHub Actions workflowuse_bioc_github_action
Create a biocthis-style GitHub issue templateuse_bioc_issue_template
Create a biocthis-style NEWS.md fileuse_bioc_news_md
Create a biocthis package template R scriptsuse_bioc_pkg_templates
Create a css with Bioconductor colors for pkgdownuse_bioc_pkgdown_css
Create a biocthis-style README.Rmd fileuse_bioc_readme_rmd
Create a biocthis-style GitHub support fileuse_bioc_support
Create a biocthis-style vignette templateuse_bioc_vignette
Use the 'tinytest' framework for unit testsuse_tinytest use_tiny_test