Package: bodymapRat 1.28.0

Stephanie Hicks

bodymapRat: Experimental dataset from the rat BodyMap project

This package contains a SummarizedExperiment from the Yu et al. (2013) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. Raw FASTQ files were downloaded and mapped using STAR. Data is available on ExperimentHub as a data package.

Authors:Stephanie Hicks [aut, cre], Kwame Okrah [aut]

bodymapRat_1.28.0.tar.gz
bodymapRat_1.28.0.tar.gz(r-4.7-any)bodymapRat_1.28.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
bodymapRat/json (API)

# Install 'bodymapRat' in R:

install.packages('bodymapRat', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:bodymapRat-1.29.0(data/experiment 3.24)bodymapRat-1.28.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

sequencingdata rnaseqdata expressiondata experimentdata experimenthub datapkg

4.00 score 10 scripts 1 exports 67 dependencies

Last updated from:e893e152da (on RELEASE_3_23). Checks:1 NOTE, 3 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	NOTE	162
linux-devel	OK	304
source / vignettes	OK	236
linux-release	OK	300

Exports:bodymapRat

Dependencies:abind AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr DelayedArray dplyr ExperimentHub fastmap filelock generics GenomicRanges glue httr httr2 IRanges jsonlite KEGGREST lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Arrays S4Vectors Seqinfo SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

The bodymapRat data user's guide

Introduction | References | SessionInfo

Rendered frombodymapRat.Rmdusingknitr::rmarkdown

Last update: 2019-04-04
Started: 2019-03-20

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Experimental dataset from the rat BodyMap project	bodymapRat