Package: breakpointR
Type: Package
Title: Find breakpoints in Strand-seq data
Version: 1.30.0
Date: 2021-11-20
Author: David Porubsky, Ashley Sanders, Aaron Taudt
Maintainer: David Porubsky <david.porubsky@gmail.com>
Description: This package implements functions for finding breakpoints,
        plotting and export of Strand-seq data.
Depends: R (>= 3.5), GenomicRanges, cowplot, breakpointRdata
Imports: methods, utils, grDevices, stats, S4Vectors, GenomeInfoDb (>=
        1.12.3), IRanges, Rsamtools, GenomicAlignments, ggplot2,
        BiocGenerics, gtools, doParallel, foreach
Suggests: knitr, BiocStyle, testthat
License: file LICENSE
LazyLoad: yes
VignetteBuilder: knitr
Packaged: 2026-10-08 09:06:25 UTC; root
biocViews: Software, Sequencing, DNASeq, SingleCell, Coverage
URL: https://github.com/daewoooo/BreakPointR
RoxygenNote: 7.2.3
Config/pak/sysreqs: libbz2-dev liblzma-dev libssl-dev xz-utils
        zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:48:44 UTC
RemoteUrl: https://github.com/bioc/breakpointR
RemoteRef: RELEASE_3_23
RemoteSha: c6194609a7d18bf9f3b8a2e0038664da7430300d
NeedsCompilation: no