# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "bsseq" in publications use:'
type: software
license: Artistic-2.0
title: 'bsseq: Analyze, manage and store whole-genome methylation data'
version: 1.48.0
doi: 10.1186/gb-2012-13-10-r83
identifiers:
- type: doi
  value: 10.32614/CRAN.package.bsseq
abstract: A collection of tools for analyzing and visualizing whole-genome methylation
  data from sequencing. This includes whole-genome bisulfite sequencing and Oxford
  nanopore data.
authors:
- family-names: Hansen
  given-names: Kasper Daniel
  email: kasperdanielhansen@gmail.com
  orcid: https://orcid.org/0000-0003-0086-0687
- family-names: Hickey
  given-names: Peter
  email: peter.hickey@gmail.com
  orcid: https://orcid.org/0000-0002-8153-6258
preferred-citation:
  type: article
  title: 'BSmooth: from whole genome bisulfite sequencing reads to differentially
    methylated regions'
  authors:
  - family-names: Hansen
    given-names: Kasper D.
  - family-names: Langmead
    given-names: Benjamin
  - family-names: Irizarry
    given-names: Rafael A.
  journal: Genome Biology
  year: '2012'
  volume: '13'
  issue: '10'
  doi: 10.1186/gb-2012-13-10-r83
  start: R83
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/kasperdanielhansen/bsseq
commit: a950720eb04ed59290104b8fa7448cc79fef190e
url: https://github.com/kasperdanielhansen/bsseq
date-released: '2026-04-28'
contact:
- family-names: Hansen
  given-names: Kasper Daniel
  email: kasperdanielhansen@gmail.com
  orcid: https://orcid.org/0000-0003-0086-0687