Package: bsseqData 0.50.0

Kasper Daniel Hansen

bsseqData: Example whole genome bisulfite data for the bsseq package

Example whole genome bisulfite data for the bsseq package

Authors:Kasper Daniel Hansen

bsseqData_0.50.0.tar.gz
bsseqData_0.50.0.tar.gz(r-4.7-any)bsseqData_0.50.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
bsseqData/json (API)

# Install 'bsseqData' in R:
install.packages('bsseqData', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • BS.cancer.ex - WGBS for colon cancer, chr 21 and 22
  • BS.cancer.ex.fit - WGBS for colon cancer, chr 21 and 22, including smoothed methylation values
  • BS.cancer.ex.tstat - T-statistics for WGBS data for colon cancer, chr 21 and 22
  • keepLoci.ex - Which methylation loci were included in an analysis of BS.cancer.ex.

On BioConductor:bsseqData-0.51.0(data/experiment 3.24)bsseqData-0.50.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

genomecancerdatacoloncancerdatasequencingdatadatapkg

2.56 score 18 scripts 0 exports 81 dependencies

Last updated from:4695c45280 (on RELEASE_3_23). Checks:1 ERROR, 2 WARNING, 1 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR174
linux-develWARNING332
source / vignettesOK375
linux-releaseWARNING374

Exports:

Dependencies:abindaskpassassortheadbeachmatBHBiobaseBiocGenericsBiocIObiocmakeBiocParallelBiostringsbitopsBSgenomebsseqcigarilloclicodetoolscpp11crayoncurldata.tableDelayedArrayDelayedMatrixStatsdir.expiryfarverfilelockformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangesgluegtoolsh5mreadHDF5ArrayhttrIRangesjsonlitelabelinglambda.rlatticelifecyclelimmalocfitMatrixMatrixGenericsmatrixStatsmimeopensslpermuteR.methodsS3R.ooR.utilsR6RColorBrewerRcppRCurlrestfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsscalesSeqinfosnowSparseArraysparseMatrixStatsstatmodSummarizedExperimentsysviridisLiteXMLXVectoryaml