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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "casper" in publications use:'
type: software
title: 'casper: Characterization of Alternative Splicing Based on Paired-End Reads'
version: 2.46.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.casper
abstract: Infer alternative splicing from paired-end RNA-seq data. The model is based
  on counting paths across exons, rather than pairwise exon connections, and estimates
  the fragment size and start distributions non-parametrically, which improves estimation
  precision.
authors:
- family-names: Rossell
  given-names: David
  email: rosselldavid@gmail.com
- family-names: Stephan-Otto
  given-names: Camille
- family-names: Kroiss
  given-names: Manuel
- family-names: Stobbe
  given-names: Miranda
- family-names: Pena
  given-names: Victor
preferred-citation:
  type: article
  title: Quantifying alternative splicing from paired-end RNA-seq data
  authors:
  - family-names: Rossell
    given-names: D.
  - family-names: Stephan-Otto Attolini
    given-names: C.
  - family-names: Kroiss
    given-names: M.
  - family-names: Stocker
    given-names: A.
  journal: Annals of Applied Statistics
  year: '2014'
  volume: '8'
  issue: '1'
  start: '309'
  end: '330'
repository: https://bioc-release.r-universe.dev
commit: f431d9ce29d23662ca23440e35991a33fbc7e320
date-released: '2026-03-12'
contact:
- family-names: Rossell
  given-names: David
  email: rosselldavid@gmail.com