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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "ccrepe" in publications use:'
type: software
license: MIT
title: 'ccrepe: ccrepe_and_nc.score'
version: 1.48.0
doi: 10.32614/CRAN.package.ccrepe
abstract: 'The CCREPE (Compositionality Corrected by REnormalizaion and PErmutation)
  package is designed to assess the significance of general similarity measures in
  compositional datasets. In microbial abundance data, for example, the total abundances
  of all microbes sum to one; CCREPE is designed to take this constraint into account
  when assigning p-values to similarity measures between the microbes. The package
  has two functions: ccrepe: Calculates similarity measures, p-values and q-values
  for relative abundances of bugs in one or two body sites using bootstrap and permutation
  matrices of the data. nc.score: Calculates species-level co-variation and co-exclusion
  patterns based on an extension of the checkerboard score to ordinal data.'
authors:
- name: Bielski
  email: craig.bielski@gmail.com
- family-names: Weingart
  given-names: George
  email: george.weingart@gmail.com
repository: https://bioc-release.r-universe.dev
commit: c620a51b173a9557e81e330481dfa96b4ee91992
date-released: '2024-02-06'
contact:
- name: Bielski
  email: craig.bielski@gmail.com
- family-names: Weingart
  given-names: George
  email: george.weingart@gmail.com