Introduction | Obtaining each dataset | Investigating mapping statistics | Session information | References
Package: chipseqDBData 1.28.0
Aaron Lun
chipseqDBData: Data for the chipseqDB Workflow
Sorted and indexed BAM files for ChIP-seq libraries, for use in the chipseqDB workflow. BAM indices are also included.
Authors:
chipseqDBData_1.28.0.tar.gz
chipseqDBData_1.28.0.tar.gz(r-4.7-any)chipseqDBData_1.28.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
chipseqDBData/json (API)
| # Install 'chipseqDBData' in R: |
| install.packages('chipseqDBData', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:chipseqDBData-1.29.0(data/experiment 3.24)chipseqDBData-1.28.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
sequencingdatachipseqdataexperimenthubdatapkg
Last updated from:f344861e4d (on RELEASE_3_23). Checks:3 NOTE, 1 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 153 | ||
| linux-devel | NOTE | 254 | ||
| source / vignettes | OK | 425 | ||
| linux-release | NOTE | 263 |
Exports:CBPDataH3K27me3DataH3K4me3DataH3K9acDataNFYAData
Dependencies:AnnotationDbiAnnotationHubaskpassBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocParallelBiocVersionBiostringsbitbit64bitopsblobcachemclicodetoolscpp11crayoncurlDBIdbplyrdplyrExperimentHubfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomicRangesgluehttrhttr2IRangesjsonliteKEGGRESTlambda.rlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsRhtslibrlangRsamtoolsRSQLiteS4VectorsSeqinfosnowstringistringrsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| ChIP-seq DB datasets | CBPData H3K27me3Data H3K4me3Data H3K9acData NFYAData |
