Package: cliProfiler 1.18.0

You Zhou

cliProfiler: A package for the CLIP data visualization

An easy and fast way to visualize and profile the high-throughput IP data. This package generates the meta gene profile and other profiles. These profiles could provide valuable information for understanding the IP experiment results.

Authors:You Zhou [aut, cre], Kathi Zarnack [aut]

cliProfiler_1.18.0.tar.gz
cliProfiler_1.18.0.zip(r-4.7-any)cliProfiler_1.18.0.zip(r-4.6-any)cliProfiler_1.18.0.zip(r-4.5-any)
cliProfiler_1.18.0.tgz(r-4.6-any)cliProfiler_1.18.0.tgz(r-4.5-any)
cliProfiler_1.18.0.tar.gz(r-4.7-any)cliProfiler_1.18.0.tar.gz(r-4.6-any)
cliProfiler_1.18.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
cliProfiler/json (API)

# Install 'cliProfiler' in R:

install.packages('cliProfiler', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/codezy99/cliprofiler/issues

On BioConductor:cliProfiler-1.19.0(bioc 3.24)cliProfiler-1.18.0(bioc 3.23)

sequencing chipseq visualization epigenetics genetics

4.26 score 18 scripts 464 downloads 7 exports 71 dependencies

Last updated from:8c20dc898f (on RELEASE_3_23). Checks:1 NOTE, 9 OK. Indexed: no.

Target	Result	Time
bioc-checks	NOTE	246
linux-devel	OK	425
source / vignettes	OK	268
linux-release	OK	418
macos-release	OK	382
macos-oldrel	OK	319
windows-devel	OK	344
windows-release	OK	226
windows-oldrel	OK	254
wasm-release	OK	168

Exports:exonProfile geneTypeProfile intronProfile metaGeneProfile motifProfile spliceSiteProfile windowProfile

Dependencies:abind askpass BH Biobase BiocGenerics BiocIO BiocParallel Biostrings bitops BSgenome cigarillo cli codetools cpp11 crayon curl DelayedArray dplyr farver formatR futile.logger futile.options generics GenomicAlignments GenomicRanges ggplot2 glue gtable httr IRanges isoband jsonlite labeling lambda.r lattice lifecycle magrittr Matrix MatrixGenerics matrixStats mime openssl pillar pkgconfig R6 RColorBrewer RCurl restfulr Rhtslib rjson rlang Rsamtools rtracklayer S4Arrays S4Vectors S7 scales Seqinfo snow SparseArray SummarizedExperiment sys tibble tidyselect utf8 vctrs viridisLite withr XML XVector yaml

cliProfiler Vignettes

Rendered fromcliProfilerIntroduction.Rmdusingknitr::rmarkdown

Last update: 2021-10-13
Started: 2021-06-16

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
exonProfile for the GRanges objects	exonProfile
geneTypeProfile for the GRanges objects	geneTypeProfile
intronProfile for the GRanges objects	intronProfile
metaGeneProfile for the GRanges objects	metaGeneProfile
motifProfile for the GRanges objects	motifProfile
spliceSiteProfile for the GRanges objects	spliceSiteProfile
windowProfile for the GRanges objects	windowProfile