Package: cliProfiler 1.18.0

You Zhou

cliProfiler: A package for the CLIP data visualization

An easy and fast way to visualize and profile the high-throughput IP data. This package generates the meta gene profile and other profiles. These profiles could provide valuable information for understanding the IP experiment results.

Authors:You Zhou [aut, cre], Kathi Zarnack [aut]

cliProfiler_1.18.0.tar.gz
cliProfiler_1.18.0.zip(r-4.7)cliProfiler_1.18.0.zip(r-4.6)cliProfiler_1.18.0.zip(r-4.5)
cliProfiler_1.18.0.tgz(r-4.6-any)cliProfiler_1.18.0.tgz(r-4.5-any)
cliProfiler_1.18.0.tar.gz(r-4.7-any)cliProfiler_1.18.0.tar.gz(r-4.6-any)
cliProfiler_1.18.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
cliProfiler/json (API)
NEWS

# Install 'cliProfiler' in R:
install.packages('cliProfiler', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/codezy99/cliprofiler/issues

On BioConductor:cliProfiler-1.19.0(bioc 3.24)cliProfiler-1.18.0(bioc 3.23)

sequencingchipseqvisualizationepigeneticsgenetics

4.26 score 18 scripts 278 downloads 7 exports 71 dependencies

Last updated from:8c20dc898f (on RELEASE_3_23). Checks:1 NOTE, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE250
linux-devel-x86_64OK440
source / vignettesOK352
linux-release-x86_64OK436
macos-release-arm64OK257
macos-oldrel-arm64OK274
windows-develOK340
windows-releaseOK347
windows-oldrelOK301
wasm-releaseOK196

Exports:exonProfilegeneTypeProfileintronProfilemetaGeneProfilemotifProfilespliceSiteProfilewindowProfile

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomecigarilloclicodetoolscpp11crayoncurlDelayedArraydplyrfarverformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraySummarizedExperimentsystibbletidyselectutf8vctrsviridisLitewithrXMLXVectoryaml

cliProfiler Vignettes

You Zhou, Kathi Zarnack

Rendered fromcliProfilerIntroduction.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2021-10-13
Started: 2021-06-16