# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "clustifyr" in publications use:'
type: software
license: MIT
title: 'clustifyr: Classifier for Single-cell RNA-seq Using Cell Clusters'
version: 1.24.0
doi: 10.12688/f1000research.22969.2
identifiers:
- type: doi
  value: 10.32614/CRAN.package.clustifyr
abstract: Package designed to aid in classifying cells from single-cell RNA sequencing
  data using external reference data (e.g., bulk RNA-seq, scRNA-seq, microarray, gene
  lists). A variety of correlation based methods and gene list enrichment methods
  are provided to assist cell type assignment.
authors:
- family-names: Fu
  given-names: Rui
  email: ray.sinensis@gmail.com
- family-names: Riemondy
  given-names: Kent
  email: kent.riemondy@gmail.com
preferred-citation:
  type: article
  title: 'clustifyr: An R package for automated single-cell RNA sequencing cluster
    classification'
  authors:
  - family-names: Fu
    given-names: Rui
    email: rui.fu@cuanschutz.edu
  - family-names: Gillen
    given-names: Austin
  - family-names: Sheridan
    given-names: Ryan M.
  - family-names: Tian
    given-names: Chengzhe
  - family-names: Daya
    given-names: Michelle
  - family-names: Hao
    given-names: Yue
  - family-names: Hesselberth
    given-names: Jay R.
  - family-names: Riemondy
    given-names: Kent A.
    email: kent.riemondy@gmail.com
  year: '2019'
  journal: F1000 Research
  doi: 10.12688/f1000research.22969.2
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/rnabioco/clustifyr
commit: 3b079e05f16c66d413cb53cae6b40b9bc4401a09
url: https://rnabioco.github.io/clustifyr/
date-released: '2026-04-28'
contact:
- family-names: Fu
  given-names: Rui
  email: ray.sinensis@gmail.com