Package: cnvGSAdata 1.48.0

Joseph Lugo

cnvGSAdata: Data used in the vignette of the cnvGSA package

This package contains the data used in the vignette of the cnvGSA package.

# Install 'cnvGSAdata' in R:

install.packages('cnvGSAdata', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

On BioConductor:cnvGSAdata-1.49.0(data/experiment 3.24)cnvGSAdata-1.48.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

Last updated from:1bdae3a899 (on RELEASE_3_23). Checks:1 ERROR, 3 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	ERROR	121
linux-devel	OK	205
source / vignettes	OK	163
linux-release	OK	145

Exports:

Help page	Topics
Data used in the examples and vignette of the cnvGSA package	cnvGSAdata-package cnvGSAdata
Rare CNV data from Pinto et al. 2014 ASD study	cnv_AGP_demo.txt
cnvGSA example input	cnvGSA.in cnvGSA_input_example.RData
cnvGSA example output	cnvGSA.out cnvGSA_output_example.RData
Generic file for Enrichment Map with data from Pinto et al. 2014 ASD study	enrGeneric_AGP_demo.txt
Gene-set data from Pinto et al. 2014 ASD study	enrGMT_AGP_demo.gmt
Gene System data	gene_ID_demo.txt
gsData example output	gsData gs_data_example.RData
Genes of interest used in the Pinto et al. 2014 ASD study	kl_gene_AGP_demo.txt
Known loci of genes in the Pinto et al. 2014 ASD study	kl_loci_AGP_demo.txt
Covariate/phenotype data from Pinto et al. 2014 ASD study	ph_AGP_demo.txt