Package: coRdon Type: Package Title: Codon Usage Analysis and Prediction of Gene Expressivity Version: 1.30.0 Authors@R: c(person(given = "Anamaria", family = "Elek", role = c("cre", "aut"), email = "anamariaelek@gmail.com"), person(given = "Maja", family = "Kuzman", role = "aut", email = "mkuzman@mail.bioinfo.hr"), person(given = "Kristian", family = "Vlahovicek", role = "aut", email = "kristian@bioinfo.hr")) Description: Tool for analysis of codon usage in various unannotated or KEGG/COG annotated DNA sequences. Calculates different measures of CU bias and CU-based predictors of gene expressivity, and performs gene set enrichment analysis for annotated sequences. Implements several methods for visualization of CU and enrichment analysis results. License: Artistic-2.0 LazyData: TRUE biocViews: Software, Metagenomics, GeneExpression, GeneSetEnrichment, GenePrediction, Visualization, KEGG, Pathways, Genetics CellBiology, BiomedicalInformatics, ImmunoOncology Depends: R (>= 3.5) Imports: methods, stats, utils, Biostrings, Biobase, dplyr, stringr, purrr, ggplot2, data.table Suggests: BiocStyle, testthat, knitr, rmarkdown RoxygenNote: 6.1.1 Collate: 'coRdon.R' 'genCode-class.R' 'codonTable-class.R' 'functions.R' 'codonUsage.R' 'codonUsage-expressivity.R' 'codonUsage-visualization.R' 'crossTab-class.R' 'data.R' 'enrichment-visualization.R' 'enrichment.R' 'readSet.R' VignetteBuilder: knitr URL: https://github.com/BioinfoHR/coRdon BugReports: https://github.com/BioinfoHR/coRdon/issues Config/pak/sysreqs: libicu-dev zlib1g-dev Repository: Bioconductor 3.23 Date/Publication: 2026-04-28 12:48:23 UTC RemoteUrl: https://github.com/bioc/coRdon RemoteRef: RELEASE_3_23 RemoteSha: 9aab9bdb3d1caeb0ea7caa3dead8f3d988b41879 NeedsCompilation: no Packaged: 2026-09-16 07:20:54 UTC; root Author: Anamaria Elek [cre, aut], Maja Kuzman [aut], Kristian Vlahovicek [aut] Maintainer: Anamaria Elek