Package: consICA 2.10.0

Petr V. Nazarov

consICA: consensus Independent Component Analysis

consICA implements a data-driven deconvolution method – consensus independent component analysis (ICA) to decompose heterogeneous omics data and extract features suitable for patient diagnostics and prognostics. The method separates biologically relevant transcriptional signals from technical effects and provides information about the cellular composition and biological processes. The implementation of parallel computing in the package ensures efficient analysis of modern multicore systems.

Authors:Petr V. Nazarov [aut, cre], Tony Kaoma [aut], Maryna Chepeleva [aut]

consICA_2.10.0.tar.gz
consICA_2.10.0.zip(r-4.7)consICA_2.10.0.zip(r-4.6)consICA_2.10.0.zip(r-4.5)
consICA_2.10.0.tgz(r-4.6-any)consICA_2.10.0.tgz(r-4.5-any)
consICA_2.10.0.tar.gz(r-4.7-any)consICA_2.10.0.tar.gz(r-4.6-any)
consICA_2.10.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
consICA/json (API)
NEWS

# Install 'consICA' in R:
install.packages('consICA', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/biomod-lih/consica/issues

Datasets:

On BioConductor:consICA-2.11.0(bioc 3.24)consICA-2.10.0(bioc 3.23)

technologystatisticalmethodsequencingrnaseqtranscriptomicsclassificationfeatureextraction

4.70 score 3 scripts 274 downloads 13 exports 77 dependencies

Last updated from:c4a1555952 (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE248
linux-devel-x86_64NOTE453
source / vignettesOK374
linux-release-x86_64NOTE452
macos-release-arm64NOTE300
macos-oldrel-arm64NOTE221
windows-develNOTE368
windows-releaseNOTE342
windows-oldrelNOTE388
wasm-releaseOK213

Exports:anovaICconsICAestimateVarianceExplainedgetFeaturesgetGOis.consICAoneICAoverlapGOplotICVarianceExplainedsaveReportsetOrientationsortDataFramesurvivalAnalysis

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIDelayedArrayfarverfastICAfastmapformatRfutile.loggerfutile.optionsgenericsGenomicRangesggplot2glueGO.dbgraphgtablehttrIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslorg.Hs.eg.dbpheatmappkgconfigpngR6RColorBrewerRcppRcppArmadilloRcppParallelRfastrlangRSQLiteS4ArraysS4VectorsS7scalesSeqinfosmsnowSparseArraySparseMSummarizedExperimentsurvivalsystopGOvctrsviridisLitewithrXVectorzigg

The consICa package: User’s manual

Petr V. Nazarov, Tony Kaoma, Maryna Chepeleva

Rendered fromConsICA.Rmdusingknitr::rmarkdownon May 27 2026.

Last update: 2023-09-18
Started: 2022-04-01