Changes in version 1.5.1 (2019-12-03)                  

    o   strand_mode argument replaces ignore_strand in buildSummarized.

    o   fragments default in buildSummarized changed to FALSE

    o   update vignette

                 Changes in version 1.3.4 (2019-09-16)                  

    o   table_means function of multi_de_pairs updated to be n=1 aware

    o   add warning when less than two biological replicates

                 Changes in version 1.3.3 (2019-06-27)                  

    o   norm_method paramter in multi_de_pairs to allow only EDASeq normalisation 

                 Changes in version 1.3.2 (2019-06-21)                  

    o   make character output for annotation

    o   remove prior normalisation for RUVr

                 Changes in version 1.3.1 (2019-06-18)                  

    o   fix buildSummarized bug in detection of minimum paired numbers

    o   fix buildSummarized htseq with out of order rownames

    o   add parameter to buildSummarized for technical_reps

    o   technical_reps merges reads from technical replicates

    o   change merged column name from p_max to p_intersect

    o   change LogFC of merged results to mean(LogFC) of all methods

    o   change AveExpr of merged results to mean(AveExpr) of all methods

    o   addition of merged column name p_union (Union)

    o   addition of merged column name LogFC_sd (Standard Deviation of FC)

    o   updating plotting functions to add weight for LogFC_sd

    o   add numbers for each category to legend of plots

    o   disabled cooksCutoff for DESeq2 for comparability of all p-value rankings

    o   add option gtf_annotate multi_de_pairs for annotation of gene symbols from gtf and combine with tx_db

    o   update vignette

    o   version 1.3.0 onwards is BioC 3.9

                 Changes in version 1.0.7 (2019-03-01)                  

    o   export RUV corrected summarized file before model fit

    o   option to summarize read by transcript, exon or cds added to buildSummarized

    o   added chromosome coordinates to annotation of merged results

    o   include gtf or txdb as meta-data in summarized object

    o   added option, htseq_dir, to import HTSEQ count files to buildSummarized

    o   fixed sample_table format check (refactorise)

                 Changes in version 1.0.6 (2019-12-31)                  

    o   add legend and label option to multi_de_plots

    o   fixing bug for paired mode model matrix in multi_de_pairs without RUV

    o   update vignette

                 Changes in version 1.0.5 (2019-12-16)                  

    o   fixing first column name when writing tables for edgeR, Voom and DEseq

    o   fixed RUV model coefficients carrying through

                 Changes in version 1.0.4 (2019-12-12)                  

    o   fixed ranking bug for combined data

    o   adding min_p to merged tables

                 Changes in version 1.0.3 (2019-12-10)                  

    o   fixed ensembl_annotate option for multi_de_pairs

    o   added BiocGenerics as depends

                 Changes in version 1.0.2 (2019-12-09)                  

    o   filter error update to buildSummarized

    o   add error reporting with incorrect pairs or group numbers

    o   add option to force_build to buildSummarized

    o   fix color bug in diag_plots

    o   fix annotation documentation for multi_de_pairs

    o   update filter option to permit from summarized experiment

    o   update vignette

                 Changes in version 1.0.1 (2019-12-07)                  

    o   Fixed bugs - build gtf from path

                 Changes in version 1.0.0 (2018-11-01)                  

    o   Submitted to Bioconductor