Package: consensusOV 1.34.0

Benjamin Haibe-Kains

consensusOV: Gene expression-based subtype classification for high-grade serous ovarian cancer

This package implements four major subtype classifiers for high-grade serous (HGS) ovarian cancer as described by Helland et al. (PLoS One, 2011), Bentink et al. (PLoS One, 2012), Verhaak et al. (J Clin Invest, 2013), and Konecny et al. (J Natl Cancer Inst, 2014). In addition, the package implements a consensus classifier, which consolidates and improves on the robustness of the proposed subtype classifiers, thereby providing reliable stratification of patients with HGS ovarian tumors of clearly defined subtype.

Authors:Gregory M Chen [aut], Lavanya Kannan [aut], Ludwig Geistlinger [aut], Victor Kofia [aut], Levi Waldron [aut], Christopher Eeles [ctb], Benjamin Haibe-Kains [aut, cre]

consensusOV_1.34.0.tar.gz
consensusOV_1.34.0.zip(r-4.7)consensusOV_1.34.0.zip(r-4.6)consensusOV_1.34.0.zip(r-4.5)
consensusOV_1.34.0.tgz(r-4.6-any)consensusOV_1.34.0.tgz(r-4.5-any)
consensusOV_1.34.0.tar.gz(r-4.7-any)consensusOV_1.34.0.tar.gz(r-4.6-any)
consensusOV_1.34.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
consensusOV/json (API)
NEWS

# Install 'consensusOV' in R:
install.packages('consensusOV', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bhklab/consensusov/issues

Datasets:

On BioConductor:consensusOV-1.35.0(bioc 3.24)consensusOV-1.34.0(bioc 3.23)

classificationclusteringdifferentialexpressiongeneexpressionmicroarraytranscriptomicscancer-datacancer-genomicscancer-researchexpression-databaseovarian-cancer

6.28 score 3 stars 1 packages 30 scripts 416 downloads 8 exports 152 dependencies

Last updated from:05fcc8ca02 (on RELEASE_3_23). Checks:1 NOTE, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE227
linux-devel-x86_64OK436
source / vignettesOK390
linux-release-x86_64OK456
macos-release-arm64OK273
macos-oldrel-arm64OK277
windows-develOK417
windows-releaseOK399
windows-oldrelOK353
wasm-releaseOK188

Exports:get.bentink.subtypesget.consensus.subtypesget.hao.subtypesget.helland.subtypesget.konecny.subtypesget.subtypesget.verhaak.subtypesmargin

Dependencies:abindAIMSamapannotateAnnotationDbiaskpassassortheadbeachmatBHBiobaseBiocFileCacheBiocGenericsbiocmakeBiocParallelBiocSingularbiomaRtBiostringsbitbit64blobbootstrapcachemclasscliclustercodetoolscpp11crayoncurldata.tableDBIdbplyrDelayedArrayDelayedMatrixStatsdiagramdigestdir.expirydplyre1071farverfastmapfilelockformatRfutile.loggerfutile.optionsfuturefuture.applygdatagenefugenericsGenomicRangesggplot2globalsgluegraphGSEABaseGSVAgtablegtoolsh5mreadHDF5Arrayhmshttrhttr2iC10iC10TrainingDataimputeipredIRangesirlbaisobandjsonliteKEGGRESTKernSmoothlabelinglambda.rlatticelavalifecyclelimmalistenvmagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisememusemimennetnumDerivopensslpamrparallellypillarpkgconfigpngprettyunitsprodlimprogressprogressrproxypurrrR6randomForestrappdirsRColorBrewerRcpprhdf5rhdf5filtersRhdf5librjsonrlangrmetarpartRSQLitersvdS4ArraysS4VectorsS7ScaledMatrixscalesSeqinfoshapeSingleCellExperimentsnowSparseArraysparseMatrixStatsSpatialExperimentSQUAREMstatmodstringistringrSummarizedExperimentSuppDistssurvcompsurvivalsurvivalROCsystibbletidyrtidyselectutf8vctrsviridisLitewithrXMLxml2xtableXVector

Molecular subtyping for ovarian cancer

Rendered fromconsensusOV.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2024-02-05
Started: 2017-06-09