Package: consensusSeekeR
Version: 1.40.0
Date: 2025-10-14
Title: Detection of consensus regions inside a group of experiences
        using genomic positions and genomic ranges
Description: This package compares genomic positions and genomic ranges
        from multiple experiments to extract common regions. The size
        of the analyzed region is adjustable as well as the number of
        experiences in which a feature must be present in a potential
        region to tag this region as a consensus region. In genomic
        analysis where feature identification generates a position
        value surrounded by a genomic range, such as ChIP-Seq peaks and
        nucleosome positions, the replication of an experiment may
        result in slight differences between predicted values. This
        package enables the conciliation of the results into consensus
        regions.
Authors@R: c(person("Astrid", "Deschênes", email="adeschen@hotmail.com", 
    role=c("cre","aut"), comment=c(ORCID="0000-0001-7846-6749")), 
    person("Fabien Claude", "Lamaze", email="fabien.lamaze.1@ulaval.ca", 
    role=c("ctb")),
    person("Pascal", "Belleau", email="pascal_belleau@hotmail.com",
    role=c("aut"), comment=c(ORCID="0000-0002-0802-1071")), 
    person("Arnaud", "Droit", email="arnaud.droit@crchuq.ulaval.ca",
    role=c("aut")))
Depends: R (>= 3.5.0), BiocGenerics, IRanges, GenomicRanges,
        BiocParallel
Imports: Seqinfo, rtracklayer, stringr, S4Vectors, methods
Suggests: BiocStyle, ggplot2, knitr, rmarkdown, RUnit
License: Artistic-2.0
Encoding: UTF-8
URL: https://github.com/adeschen/consensusSeekeR
BugReports: https://github.com/adeschen/consensusSeekeR/issues
VignetteBuilder: knitr
NeedsCompilation: no
biocViews: BiologicalQuestion, ChIPSeq, Genetics, MultipleComparison,
        Transcription, PeakDetection, Sequencing, Coverage
RoxygenNote: 7.3.3
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:42:12 UTC
RemoteUrl: https://github.com/bioc/consensusSeekeR
RemoteRef: RELEASE_3_23
RemoteSha: 9f3f4d80120065988080c08bd5c3167bdfd44fcb
Packaged: 2026-09-23 07:54:30 UTC; root
Author: Astrid Deschênes [cre, aut] (ORCID:
    <https://orcid.org/0000-0001-7846-6749>),
  Fabien Claude Lamaze [ctb],
  Pascal Belleau [aut] (ORCID: <https://orcid.org/0000-0002-0802-1071>),
  Arnaud Droit [aut]
Maintainer: Astrid Deschênes <adeschen@hotmail.com>