Package: copa 1.80.0

James W. MacDonald

copa: Functions to perform cancer outlier profile analysis.

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Authors:James W. MacDonald

copa_1.80.0.tar.gz
copa_1.80.0.zip(r-4.7)copa_1.80.0.zip(r-4.6)copa_1.80.0.zip(r-4.5)
copa_1.80.0.tgz(r-4.6-x86_64)copa_1.80.0.tgz(r-4.6-arm64)copa_1.80.0.tgz(r-4.5-x86_64)copa_1.80.0.tgz(r-4.5-arm64)
copa_1.80.0.tar.gz(r-4.7-arm64)copa_1.80.0.tar.gz(r-4.7-x86_64)copa_1.80.0.tar.gz(r-4.6-arm64)copa_1.80.0.tar.gz(r-4.6-x86_64)
copa_1.80.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
copa/json (API)

# Install 'copa' in R:
install.packages('copa', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:copa-1.81.0(bioc 3.24)copa-1.80.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

onechanneltwochanneldifferentialexpressionvisualization

3.60 score 4 scripts 470 downloads 2 mentions 6 exports 3 dependencies

Last updated from:606f635a07 (on RELEASE_3_23). Checks:1 ERROR, 11 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR124
linux-devel-arm64NOTE104
linux-devel-x86_64NOTE133
source / vignettesOK149
linux-release-arm64NOTE112
linux-release-x86_64NOTE121
macos-release-arm64NOTE119
macos-release-x86_64NOTE346
macos-oldrel-arm64NOTE105
macos-oldrel-x86_64NOTE158
windows-develNOTE118
windows-releaseNOTE74
windows-oldrelNOTE75
wasm-releaseOK89

Exports:copacopaPermplotCopascatterPlotCopasummaryCopatableCopa

Dependencies:BiobaseBiocGenericsgenerics

copa Overview

Rendered fromcopa.Rnwusingutils::Sweaveon Jun 10 2026.

Last update: 2013-10-21
Started: 2013-10-21