Package: crisprBwa 1.16.0

Jean-Philippe Fortin

crisprBwa: BWA-based alignment of CRISPR gRNA spacer sequences

Provides a user-friendly interface to map on-targets and off-targets of CRISPR gRNA spacer sequences using bwa. The alignment is fast, and can be performed using either commonly-used or custom CRISPR nucleases. The alignment can work with any reference or custom genomes. Currently not supported on Windows machines.

Authors:Jean-Philippe Fortin [aut, cre]

crisprBwa_1.16.0.tar.gz

crisprBwa_1.16.0.tgz(r-4.6-any)crisprBwa_1.16.0.tgz(r-4.5-any)
crisprBwa_1.16.0.tar.gz(r-4.7-any)crisprBwa_1.16.0.tar.gz(r-4.6-any)
crisprBwa_1.16.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
crisprBwa/json (API)
NEWS

# Install 'crisprBwa' in R:

install.packages('crisprBwa', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/crisprverse/crisprbwa/issues

On BioConductor:crisprBwa-1.17.0(bioc 3.24)crisprBwa-1.16.0(bioc 3.23)

crispr functionalgenomics alignment aligner bioconductor bioconductor-package bwa crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences sgrna sgrna-design

4.89 score 1 stars 13 scripts 307 downloads 2 exports 74 dependencies

Last updated from:56974a61e9 (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

Target	Result	Time
bioc-checks	NOTE	241
linux-devel-x86_64	NOTE	428
source / vignettes	OK	322
linux-release-x86_64	NOTE	393
macos-release-arm64	NOTE	319
macos-oldrel-arm64	NOTE	294
windows-devel	NOTE	213
windows-release	NOTE	187
windows-oldrel	NOTE	151
wasm-release	OK	200