Package: crisprShiny 1.8.0

Jean-Philippe Fortin

crisprShiny: Exploring curated CRISPR gRNAs via Shiny

Provides means to interactively visualize guide RNAs (gRNAs) in GuideSet objects via Shiny application. This GUI can be self-contained or as a module within a larger Shiny app. The content of the app reflects the annotations present in the passed GuideSet object, and includes intuitive tools to examine, filter, and export gRNAs, thereby making gRNA design more user-friendly.

Authors:Jean-Philippe Fortin [aut, cre], Luke Hoberecht [aut]

crisprShiny_1.8.0.tar.gz
crisprShiny_1.8.0.zip(r-4.7)crisprShiny_1.8.0.zip(r-4.6)crisprShiny_1.8.0.zip(r-4.5)
crisprShiny_1.8.0.tgz(r-4.6-any)crisprShiny_1.8.0.tgz(r-4.5-any)
crisprShiny_1.8.0.tar.gz(r-4.7-any)crisprShiny_1.8.0.tar.gz(r-4.6-any)
crisprShiny_1.8.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
crisprShiny/json (API)
NEWS

# Install 'crisprShiny' in R:
install.packages('crisprShiny', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/crisprverse/crisprshiny/issues

Datasets:
  • guideSetExample_basic - Example of a GuideSet object storing gRNA sequences targeting the CDS of the human gene KRAS
  • guideSetExample_kras - Example of a GuideSet object storing gRNA sequences targeting the CDS of the human gene KRAS
  • guideSetExample_kras_be - Example of a GuideSet object storing gRNA sequences targeting the CDS of the human gene KRAS
  • guideSetExample_ntcs - Example of a GuideSet object storing gRNA sequences targeting the CDS of the human gene KRAS and NTCs
  • tooltipAnnotation - List of tooltip annotations
  • tss_kras - Example of a 'GenomicRanges' object storing annotated TSS ranges for the human gene KRAS
  • txdb_kras - Example of a 'CompressedGenomicRangesList' object storing annotated ranges for the human gene KRAS

On BioConductor:crisprShiny-1.9.0(bioc 3.24)crisprShiny-1.8.0(bioc 3.23)

crisprfunctionalgenomicsgenetargetguicrispr-analysiscrispr-designshiny

4.78 score 2 stars 8 scripts 226 downloads 3 exports 178 dependencies

Last updated from:17838b215c (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE299
linux-devel-x86_64NOTE628
source / vignettesOK435
linux-release-x86_64NOTE527
macos-release-arm64NOTE413
macos-oldrel-arm64NOTE457
windows-develNOTE515
windows-releaseNOTE539
windows-oldrelNOTE621
wasm-releaseOK261

Exports:crisprServercrisprShinycrisprUI

Dependencies:abindAnnotationDbiAnnotationFilterAnnotationHubaskpassbackportsbase64encBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecigarilloclicliprclustercodetoolscolorspacecommonmarkcpp11crayoncrisprBasecrisprBowtiecrisprDesigncrisprScorecrisprScoreDatacrisprVizcrosstalkcurldata.tableDBIdbplyrDelayedArraydeldirdichromatdigestdplyrDTensembldbevaluateExperimentHubfarverfastmapfilelockfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegridExtragtableGvizherehighrHmischmshtmlTablehtmltoolshtmlwidgetshttpuvhttrhttr2interpIRangesisobandjpegjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelatticeExtralazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimennetopensslotelpillarpkgconfigpngprettyunitsprogresspromisesProtGenericspurrrpwalignR6randomForestrappdirsRbowtieRColorBrewerRcppRcppEigenRcppTOMLRCurlreadrrestfulrreticulateRhtslibrjsonrlangrmarkdownrpartrprojrootRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorsS7sassscalesSeqinfoshinyshinyBSshinyjssnowsourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytextxdbmakertzdbUCSC.utilsutf8VariantAnnotationvctrsviridisLitevroomwaiterwithrxfunXMLxml2xtableXVectoryaml

Introduction to crisprShiny

Luke Hoberecht, Jean-Philippe Fortin

Rendered fromintro.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2023-10-19
Started: 2023-07-26