Package: csdR
Title: Differential gene co-expression
Version: 1.18.0
Date: 07-11-2024
Authors@R: 
    person(given = "Jakob Peder",
   family = "Pettersen",
   role = c("aut","cre"),
   email = "jakobpeder.pettersen@gmail.com",
   comment = c(ORCID = "0000-0002-3485-1634")
   )
Description: This package contains functionality to run differential
        gene co-expression across two different conditions. The
        algorithm is inspired by Voigt et al. 2017 and finds Conserved,
        Specific and Differentiated genes (hence the name CSD). This
        package include efficient and variance calculation by
        bootstrapping and Welford's algorithm.
Depends: R (>= 4.1.0)
Imports: WGCNA, glue, RhpcBLASctl, matrixStats, Rcpp
License: GPL-3
Encoding: UTF-8
NeedsCompilation: yes
BugReports: https://github.com/AlmaasLab/csdR/issues
URL: https://almaaslab.github.io/csdR,
        https://github.com/AlmaasLab/csdR
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
LinkingTo: Rcpp
biocViews: DifferentialExpression, GraphAndNetwork, GeneExpression,
        Network
Suggests: rmarkdown, knitr, testthat (>= 3.0.0), BiocStyle, magrittr,
        igraph, dplyr
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:56:27 UTC
RemoteUrl: https://github.com/bioc/csdR
RemoteRef: RELEASE_3_23
RemoteSha: 8b0fec6f5a5893bfcb97b2b0d73ccb85120c36ae
Packaged: 2026-07-04 10:52:52 UTC; root
Author: Jakob Peder Pettersen [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3485-1634>)
Maintainer: Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com>