Package 'curatedAdipoRNA'

Title: A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)
Description: A curated dataset of RNA-Seq samples. The samples are MDI-induced pre-phagocytes (3T3-L1) at different time points/stage of differentiation. The package document the data collection, pre-processing and processing. In addition to the documentation, the package contains the scripts that was used to generated the data.
Authors: Mahmoud Ahmed [aut, cre] (ORCID: <https://orcid.org/0000-0002-4377-6541>)
Maintainer: Mahmoud Ahmed <[email protected]>
License: GPL-3
Version: 1.28.0
Built: 2026-10-10 11:13:48 UTC
Source: https://github.com/bioc/curatedAdipoRNA

Help Index

Gene counts in differentiating adipocytes

Description

Gene counts in differentiating adipocytes

Usage

adipo_counts

Format

A RangedSummarizedExperiment object contains:

assay

The gene counts matrix.

colData

The phenotype data and quality control data of the samples.

rowRanges

The feature data at gene level.

metadata

The study level metadata which contains one object called studies. This is a data.frame of bibliography information of the studies from which the samples were collected.

Examples

# load the data object
data('adipo_counts')

# print the object
adipo_counts

curatedAdipoRNA package

Description

A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Details

A curated dataset of RNA-Seq samples. The samples are MDI-induced pre-phagocytes (3T3-L1) at different time points/stage of differentiation. The package document the data collection, pre-processing and processing. In addition to the documentation, the package contains the scripts that was used to generated the data. The datasets and the pipeline used to process it are documented in adipo_counts and the package vignette.