Package: cyanoFilter Type: Package Title: Phytoplankton Population Identification using Cell Pigmentation and/or Complexity Version: 1.20.0 Authors@R: c(person("Oluwafemi", "Olusoji", email = "oluwafemi.olusoji@uhasselt.be", role = c("cre", "aut")), person("Aerts", "Marc", email = "marc.aerts@uhasselt.be", role = "ctb"), person("Delaender", "Frederik", email = "frederik.delaender@unamur.be", role = "ctb"), person("Neyens", "Thomas", email = "thomas.neyens@uhasselt.be", role = "ctb"), person("Spaak", "jurg", email = "jurg.spaak@unamur.be", role = "aut")) Description: An approach to filter out and/or identify phytoplankton cells from all particles measured via flow cytometry pigment and cell complexity information. It does this using a sequence of one-dimensional gates on pre-defined channels measuring certain pigmentation and complexity. The package is especially tuned for cyanobacteria, but will work fine for phytoplankton communities where there is at least one cell characteristic that differentiates every phytoplankton in the community. URL: https://github.com/fomotis/cyanoFilter BugReports: https://github.com/fomotis/cyanoFilter/issues Depends: R(>= 4.1.0) Imports: Biobase, flowCore, flowDensity, flowClust, cytometree, ggplot2, GGally, graphics, grDevices, methods, mrfDepth, stats, utils License: MIT + file LICENSE biocViews: FlowCytometry, Clustering, OneChannel Encoding: UTF-8 RoxygenNote: 7.1.1 Suggests: magrittr, dplyr, purrr, knitr, stringr, rmarkdown, tidyr VignetteBuilder: knitr Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libjpeg-dev libpng-dev libxml2-dev libssl-dev Repository: Bioconductor 3.23 Date/Publication: 2026-04-28 12:55:36 UTC RemoteUrl: https://github.com/bioc/cyanoFilter RemoteRef: RELEASE_3_23 RemoteSha: 28fe198c17bf6f3fab036202d8d68e06344472c8 NeedsCompilation: no Packaged: 2026-10-10 14:52:02 UTC; root Author: Oluwafemi Olusoji [cre, aut], Aerts Marc [ctb], Delaender Frederik [ctb], Neyens Thomas [ctb], Spaak jurg [aut] Maintainer: Oluwafemi Olusoji