Package: cytofQC
Type: Package
Title: Labels normalized cells for CyTOF data and assigns probabilities
        for each label
Version: 2.0.0
Authors@R: c(
    person("Jill", "Lundell", role = c("aut", "cre"), email = "jflundell@gmail.com", comment = c(ORCID = "0000-0002-6048-4700")),
    person("Kelly", "Street", role = "aut", email = "street.kelly@gmail.com", comment = c(ORCID = "0000-0001-6379-5013")))
Description: cytofQC is a package for initial cleaning of CyTOF data.
        It uses a semi-supervised approach for labeling cells with
        their most likely data type (bead, doublet, debris, dead) and
        the probability that they belong to each label type. This
        package does not remove data from the dataset, but provides
        labels and information to aid the data user in cleaning their
        data. Our algorithm is able to distinguish between doublets and
        large cells.
License: Artistic-2.0
URL: https://github.com/jillbo1000/cytofQC
BugReports: https://github.com/jillbo1000/cytofQC/issues
biocViews: Software, SingleCell, Annotation
Encoding: UTF-8
Imports: CATALYST, flowCore, e1071, EZtune, gbm, ggplot2, matrixStats,
        randomForest, rmarkdown, SingleCellExperiment, stats,
        SummarizedExperiment, ssc, S4Vectors, graphics, methods,
        mixtools
RoxygenNote: 7.3.3
Suggests: gridExtra, knitr, RColorBrewer, testthat, uwot
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev
        libssl-dev perl zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 13:00:17 UTC
RemoteUrl: https://github.com/bioc/cytofQC
RemoteRef: RELEASE_3_23
RemoteSha: 6608c68c1e29ce0ab80b49f8b6fbf8562a9e5474
NeedsCompilation: no
Packaged: 2026-07-15 05:10:26 UTC; root
Author: Jill Lundell [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6048-4700>),
  Kelly Street [aut] (ORCID: <https://orcid.org/0000-0001-6379-5013>)
Maintainer: Jill Lundell <jflundell@gmail.com>