Package: decontam
Type: Package
Title: Identify Contaminants in Marker-gene and Metagenomics Sequencing
        Data
Version: 1.32.0
Date: 2021-02-19
Authors@R: 
    c(person(given = "Benjamin", family = "Callahan", role = c("aut","cre"),
             email = "benjamin.j.callahan@gmail.com"),
      person(given = "Nicole Marie", family = "Davis", role = "aut"),
      person(given = "Felix G.M.", family = "Ernst", role = "ctb",
             email = "felix.gm.ernst@outlook.com",
             comment = c(ORCID = "0000-0001-5064-0928")))
Maintainer: Benjamin Callahan <benjamin.j.callahan@gmail.com>
Description: Simple statistical identification of contaminating
        sequence features in marker-gene or metagenomics data. Works on
        any kind of feature derived from environmental sequencing data
        (e.g. ASVs, OTUs, taxonomic groups, MAGs,...). Requires DNA
        quantitation data or sequenced negative control samples.
Depends: R (>= 3.4.1), methods (>= 3.4.1)
Imports: ggplot2 (>= 2.1.0), reshape2 (>= 1.4.1), stats
Suggests: BiocStyle, knitr, rmarkdown, phyloseq
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: ImmunoOncology, Microbiome, Sequencing, Classification,
        Metagenomics
URL: https://github.com/benjjneb/decontam
BugReports: https://github.com/benjjneb/decontam/issues
RoxygenNote: 7.1.1
Config/pak/sysreqs: libicu-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:47:43 UTC
RemoteUrl: https://github.com/bioc/decontam
RemoteRef: RELEASE_3_23
RemoteSha: 783a69b26ad74d418fa79b5cf597a68df39f7119
NeedsCompilation: no
Packaged: 2026-07-08 05:59:08 UTC; root
Author: Benjamin Callahan [aut, cre],
  Nicole Marie Davis [aut],
  Felix G.M. Ernst [ctb] (ORCID: <https://orcid.org/0000-0001-5064-0928>)