# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "deltaCaptureC" in publications use:'
type: software
license: MIT
title: 'deltaCaptureC: This Package Discovers Meso-scale Chromatin Remodeling from
  3C Data'
version: 1.26.0
doi: 10.1101/2021.05.18.442939
identifiers:
- type: doi
  value: 10.32614/CRAN.package.deltaCaptureC
abstract: This package discovers meso-scale chromatin remodelling from 3C data. 3C
  data is local in nature. It givens interaction counts between restriction enzyme
  digestion fragments and a preferred 'viewpoint' region. By binning this data and
  using permutation testing, this package can test whether there are statistically
  significant changes in the interaction counts between the data from two cell types
  or two treatments.
authors:
- family-names: Shapiro
  given-names: Michael
  email: michael.shapiro@crick.ac.uk
  orcid: https://orcid.org/0000-0002-2769-9320
preferred-citation:
  type: article
  title: Chromatin interaction maps identify Wnt responsive cis-regulatory elements
    coordinating Paupar-Pax6 expression in neuronal cells
  authors:
  - family-names: Pavlaki
    given-names: Ioanna
  - family-names: Shapiro
    given-names: Michael
    email: michael.shapiro@crick.ac.uk
    orcid: https://orcid.org/0000-0002-2769-9320
  - family-names: Pisignano
    given-names: Giuseppina
  - family-names: Telenius
    given-names: Jelena
  - family-names: Munoz Descalzo
    given-names: Silivia
  - family-names: Williams
    given-names: Robert J
  - family-names: Hughes
    given-names: Jim Raymond
  - family-names: Vance
    given-names: Keith W
  year: '2021'
  doi: 10.1101/2021.05.18.442939
  url: https://www.biorxiv.org/content/early/2021/05/18/2021.05.18.442939
  journal: bioRxiv
repository: https://bioc-release.r-universe.dev
commit: 734334e6be8ae6d3ddc327f945617308583a1516
date-released: '2026-04-28'
contact:
- family-names: Shapiro
  given-names: Michael
  email: michael.shapiro@crick.ac.uk
  orcid: https://orcid.org/0000-0002-2769-9320