Package: dmGsea 1.2.1

Zongli Xu

dmGsea: Efficient Gene Set Enrichment Analysis for DNA Methylation Data

The R package dmGsea provides efficient gene set enrichment analysis specifically for DNA methylation data. It addresses key biases, including probe dependency and varying probe numbers per gene. The package supports Illumina 450K, EPIC, and mouse methylation arrays. Users can also apply it to other omics data by supplying custom probe-to-gene mapping annotations. dmGsea is flexible, fast, and well-suited for large-scale epigenomic studies.

Authors:Zongli Xu [cre, aut], Alison Motsinger-Reif [aut], Liang Niu [aut]

dmGsea_1.2.1.tar.gz
dmGsea_1.2.1.zip(r-4.7)dmGsea_1.2.1.zip(r-4.6)dmGsea_1.2.1.zip(r-4.5)
dmGsea_1.2.1.tgz(r-4.6-any)dmGsea_1.2.1.tgz(r-4.5-any)
dmGsea_1.2.1.tar.gz(r-4.7-any)dmGsea_1.2.1.tar.gz(r-4.6-any)
dmGsea_1.2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
dmGsea/json (API)
NEWS

# Install 'dmGsea' in R:
install.packages('dmGsea', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:dmGsea-1.3.1(bioc 3.24)dmGsea-1.2.1(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

genesetenrichmentpathwaysdnamethylationproteomicssequencingcopynumbervariationgeneexpressiongenomicvariationcoverage

4.60 score 3 scripts 10 exports 52 dependencies

Last updated from:7bf816f58a (on RELEASE_3_23). Checks:1 NOTE, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE438
linux-devel-x86_64OK724
source / vignettesOK561
linux-release-x86_64OK635
macos-release-arm64OK653
macos-oldrel-arm64OK515
windows-develOK569
windows-releaseOK528
windows-oldrelOK510
wasm-releaseOK409

Exports:geneID2geneNamegetGOgetIlluminaAnnotationgetKEGGgetMSigDBgetReactomegsGenegsPGgsProbegsRank

Dependencies:abindAnnotationDbiaskpassBHBiasedUrnBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIDelayedArraydqrngfastmapgenericsGenomicRangesgluehttrIRangesjsonliteKEGGRESTlatticelifecyclemathjaxrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigpngpoolrR6RcpprlangRSQLiteS4ArraysS4VectorsSeqinfositmoSparseArraySummarizedExperimentsysvctrsXVector

dmGsea User's Guide

Zongli Xu, Alison A. Motsinger-Reif, Liang Niu

Rendered fromdmGsea.Rmdusingknitr::rmarkdownon Jun 21 2026.

Last update: 2026-01-12
Started: 2025-01-19