Package: dominatR 1.0.0

Simon Lizarazo

dominatR: Feature Dominance-based R Package for Genomic Data

dominatR is an R package for quantifying and visualizing feature dominance in datasets. dominatR applies concepts drawn from physics such as center of mass and shannon's entropy to effectively visualize features (e.g. genes) that are present within a specific context or condition. The package integrates, dataframes, matrices and SummerizedExperiment objects and is able to perform common genomic normalization methods. The key aspect is the generation of plots that serve to highlight context-relevant feature dominance.

Authors:Simon Lizarazo [aut, cre], Ethan Chen [aut], Rajendra K C [aut], Kevin Van Bortle [aut, cph]

dominatR_1.0.0.tar.gz
dominatR_1.0.0.zip(r-4.7)dominatR_1.0.0.zip(r-4.6)dominatR_1.0.0.zip(r-4.5)
dominatR_1.0.0.tgz(r-4.6-any)dominatR_1.0.0.tgz(r-4.5-any)
dominatR_1.0.0.tar.gz(r-4.7-any)dominatR_1.0.0.tar.gz(r-4.6-any)
dominatR_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
dominatR/json (API)
NEWS

# Install 'dominatR' in R:
install.packages('dominatR', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/vanbortlelab/dominatr/issues

Pkgdown/docs site:https://vanbortlelab.github.io

On BioConductor:dominatR-1.1.0(bioc 3.24)dominatR-1.0.0(bioc 3.23)

visualizationnormalizationclassificationgeneexpression

5.98 score 3 stars 141 downloads 12 exports 52 dependencies

Last updated from:5264c804d2 (on RELEASE_3_23). Checks:1 NOTE, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE213
linux-devel-x86_64OK349
source / vignettesOK285
linux-release-x86_64OK339
macos-release-arm64OK223
macos-oldrel-arm64OK251
windows-develOK293
windows-releaseOK267
windows-oldrelOK277
wasm-releaseOK139

Exports:centmasscpm_normalizationentropyminmax_normalizationplot_circleplot_circle_frequencyplot_ropeplot_triangleQentropyquantile_normalizationrpkm_normalizationtpm_normalization

Dependencies:abindbase64encBiobaseBiocGenericsclicpp11DelayedArraydplyrfarvergenericsGenomicRangesgeomtextpathggforceggnewscaleggplot2gluegtableIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatspillarpkgconfigpolyclipR6RColorBrewerrlangS4ArraysS4VectorsS7scalesSeqinfoSparseArraystringiSummarizedExperimentsystemfontstextshapingtibbletidyselecttweenrutf8vctrsviridisLitewithrXVector

Introduction to dominatR

Rendered fromdominatR.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-11-19
Started: 2025-09-04