Package: dupRadar 1.42.0
dupRadar: Assessment of duplication rates in RNA-Seq datasets
Duplication rate quality control for RNA-Seq datasets.
Authors:
dupRadar_1.42.0.tar.gz
dupRadar_1.42.0.zip(r-4.7-any)dupRadar_1.42.0.zip(r-4.6-any)dupRadar_1.42.0.zip(r-4.5-any)
dupRadar_1.42.0.tgz(r-4.6-any)dupRadar_1.42.0.tgz(r-4.5-any)
dupRadar_1.42.0.tar.gz(r-4.7-any)dupRadar_1.42.0.tar.gz(r-4.6-any)
dupRadar_1.42.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
dupRadar/json (API)
| # Install 'dupRadar' in R: |
| install.packages('dupRadar', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ssayols/dupradar/issues
- dupRadar_examples - Example data containing precomputed matrices for two RNASeq experiments
On BioConductor:dupRadar-1.43.0(bioc 3.24)dupRadar-1.42.0(bioc 3.23)
technologysequencingrnaseqqualitycontrolimmunooncology
Last updated from:ae6ce9acfb (on RELEASE_3_23). Checks:4 ERROR, 4 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 206 | ||
| linux-devel-x86_64 | NOTE | 189 | ||
| source / vignettes | OK | 222 | ||
| linux-release-x86_64 | NOTE | 177 | ||
| macos-release-arm64 | NOTE | 142 | ||
| macos-oldrel-arm64 | NOTE | 98 | ||
| windows-devel | ERROR | 89 | ||
| windows-release | ERROR | 92 | ||
| windows-oldrel | ERROR | 208 | ||
| wasm-release | OK | 122 |
Exports:analyzeDupratescumulativeDuprateBarplotduprateExpBoxplotduprateExpDensPlotduprateExpFitduprateExpIdentifyduprateExpPlotexpressionHistgetBinDuplicationgetBinRpkMeangetDupMatBingetDupMatStatsgetDynamicRangegetRpkBinReadCountFractiongetRpkCumulativeReadCountFractionmarkDuplicatesreadcountExpBoxplot
Dependencies:KernSmoothlatticeMatrixRsubread
