Package: easylift 1.10.0

Abdullah Al Nahid

easylift: An R package to perform genomic liftover

The easylift package provides a convenient tool for genomic liftover operations between different genome assemblies. It seamlessly works with Bioconductor's GRanges objects and chain files from the UCSC Genome Browser, allowing for straightforward handling of genomic ranges across various genome versions. One noteworthy feature of easylift is its integration with the BiocFileCache package. This integration automates the management and caching of chain files necessary for liftover operations. Users no longer need to manually specify chain file paths in their function calls, reducing the complexity of the liftover process.

Authors:Abdullah Al Nahid [aut, cre], Hervé Pagès [aut, rev], Michael Love [aut, rev]

easylift_1.10.0.tar.gz
easylift_1.10.0.zip(r-4.7)easylift_1.10.0.zip(r-4.6)easylift_1.10.0.zip(r-4.5)
easylift_1.10.0.tgz(r-4.6-any)easylift_1.10.0.tgz(r-4.5-any)
easylift_1.10.0.tar.gz(r-4.7-any)easylift_1.10.0.tar.gz(r-4.6-any)
easylift_1.10.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
easylift/json (API)
NEWS

# Install 'easylift' in R:
install.packages('easylift', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nahid18/easylift/issues

Pkgdown/docs site:https://nahid18.github.io

On BioConductor:easylift-1.11.0(bioc 3.24)easylift-1.10.0(bioc 3.23)

softwareworkflowstepsequencingcoveragegenomeassemblydataimport

5.41 score 8 stars 16 scripts 282 downloads 1 exports 83 dependencies

Last updated from:305bd33d27 (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE170
linux-devel-x86_64NOTE399
source / vignettesOK286
linux-release-x86_64NOTE392
macos-release-arm64NOTE181
macos-oldrel-arm64NOTE232
windows-develNOTE360
windows-releaseNOTE289
windows-oldrelNOTE303
wasm-releaseOK153

Exports:easylift

Dependencies:abindaskpassBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydplyrfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicRangesgluehttrhttr2IRangesjsonlitelambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpurrrR.methodsS3R.ooR.utilsR6rappdirsRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXMLXVectoryaml

Perform Genomic Liftover

Rendered fromeasylift.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2023-10-24
Started: 2023-08-25