To cite package ‘edgeR’ in publications use:

  Chen Y, Chen L, Lun ATL, Baldoni PL, Smyth GK (2025). edgeR v4:
  powerful differential analysis of sequencing data with expanded
  functionality and improved support for small counts and larger
  datasets. Nucleic Acids Research 53(2), gkaf018.

A BibTeX entry for LaTeX users is

  @Article{,
    author = {Yunshun Chen and Lizhong Chen and Aaron T L Lun and Pedro Baldoni and Gordon K Smyth},
    title = {{edgeR} v4: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets},
    year = {2025},
    journal = {Nucleic Acids Research},
    volume = {53},
    number = {2},
    pages = {gkaf018},
    doi = {10.1093/nar/gkaf018},
  }