Package: epiregulon 2.2.0

epiregulon: Gene regulatory network inference from single cell epigenomic data

Gene regulatory networks model the underlying gene regulation hierarchies that drive gene expression and observed phenotypes. Epiregulon infers TF activity in single cells by constructing a gene regulatory network (regulons). This is achieved through integration of scATAC-seq and scRNA-seq data and incorporation of public bulk TF ChIP-seq data. Links between regulatory elements and their target genes are established by computing correlations between chromatin accessibility and gene expressions.

Authors:Xiaosai Yao [aut, cre], Tomasz Włodarczyk [aut], Aaron Lun [aut], Shang-Yang Chen [aut]