Package: epivizrData 1.40.0

Hector Corrada Bravo

epivizrData: Data Management API for epiviz interactive visualization app

Serve data from Bioconductor Objects through a WebSocket connection.

Authors:Hector Corrada Bravo [aut, cre], Florin Chelaru [aut]

epivizrData_1.40.0.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
epivizrData/json (API)
NEWS

# Install 'epivizrData' in R:
install.packages('epivizrData', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/epiviz/epivizrdata/issues

On BioConductor:epivizrData-1.41.0(bioc 3.24)epivizrData-1.40.0(bioc 3.23)

infrastructurevisualization

5.38 score 1 stars 4 packages 6 scripts 370 downloads 8 exports 83 dependencies

Last updated from:0b73c80070 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR351
linux-devel-x86_64NOTE599
source / vignettesOK429
linux-release-x86_64NOTE600
macos-release-arm64NOTE278
macos-oldrel-arm64NOTE259
windows-develNOTE404
windows-releaseNOTE405
windows-oldrelNOTE408
wasm-releaseOK309

Exports:.emptyEpivizMeasurement.emptyEpivizSparseMeasurementahToMySQLas.data.frameas.listcreateMgrregistershow

Dependencies:abindAnnotationDbiAnnotationFilteraskpassBHBiobaseBiocGenericsBiocIOBiocManagerBiocParallelBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurlDBIDelayedArrayensembldbepivizrServerfastmapformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesgluegraphhttpuvhttrIRangesjsonliteKEGGRESTlambda.rlaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslOrganismDbiotelpkgconfigpngpromisesProtGenericsR6RBGLRcppRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowSparseArraySummarizedExperimentsysUCSC.utilsvctrsXMLXVectoryaml

epivizrData Usage

Héctor Corrada Bravo

Rendered fromepivizrData.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2020-04-09
Started: 2016-04-15

Readme and manuals

Help Manual

Help pageTopics
Create empty Epiviz Measurement.emptyEpivizMeasurement
Create empty Epiviz Measurement.emptyEpivizSparseMeasurement
Utility function to import data to a MySQL database from Annotation HubahToMySQL
Generic as.data.frame method for EpivizData objectsas.data.frame,EpivizData-method
Convert 'EpivizMeasurement' object to 'list'as.list,EpivizMeasurement-method
Convert 'SparseEpivizMeasurement' object to 'list'as.list,SparseEpivizMeasurement-method
Create a data manager for epiviz appcreateMgr
Data container for interval data.EpivizBlockData EpivizBlockData-class
Container for basepair level numeric dataEpivizBpData EpivizBpData-class
Data container for epiviz data serverEpivizData EpivizData-class
Class providing data manager for epiviz appEpivizDataMgr EpivizDataMgr-class
Data container for RangedSummarizedExperiment objectsEpivizFeatureData EpivizFeatureData-class
Container for gene annotation dataEpivizGeneInfoData EpivizGeneInfoData-class
Class encapsulating a measurement description for epiviz app.EpivizMeasurement EpivizMeasurement-class
epivizrDataepivizrData
Generic method to register data to the data serverregister register,data.frame-method register,EnsDb-method register,ExpressionSet-method register,GenomicRanges-method register,OrganismDb-method register,RangedSummarizedExperiment-method register,TxDb-method
Display measurement datasourceId and idshow,EpivizMeasurement-method
Display measurement datasourceId and idshow,SparseEpivizMeasurement-method
Class encapsulating a measurement description for epiviz app.SparseEpivizMeasurement SparseEpivizMeasurement-class