Introduction | Example: Rat Toxicogenomics | Load Example Data | Define Input Parameters | Run Example and View Output | Comparison of Performance Between Experiments | UHRR vs. HBRR Microarray Experiment | UHRR vs. HBRR RNA-Seq Experiment | Analysis Details and Options | Flexibility in Differential Expression Testing | LODR Estimation Options | Printing Plots to File | Analysis of Alternative Spike-in Designs | R version and sessionInfo() output
Package: erccdashboard 1.46.0
Sarah Munro
erccdashboard: Assess Differential Gene Expression Experiments with ERCC Controls
Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.
Authors:
erccdashboard_1.46.0.tar.gz
erccdashboard_1.46.0.zip(r-4.7-any)erccdashboard_1.46.0.zip(r-4.6-any)erccdashboard_1.46.0.zip(r-4.5-any)
erccdashboard_1.46.0.tgz(r-4.6-any)erccdashboard_1.46.0.tgz(r-4.5-any)
erccdashboard_1.46.0.tar.gz(r-4.7-any)erccdashboard_1.46.0.tar.gz(r-4.6-any)
erccdashboard_1.46.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
erccdashboard/json (API)
| # Install 'erccdashboard' in R: |
| install.packages('erccdashboard', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- ERCCDef - ERCCDef dataframe
- ERCCMix1and2 - ERCCMix1and2 dataframe
- MET.CTL.countDat - Rat toxicogenomics count data
- MET.CTL.totalReads - Rat toxicogenomics total read data
- UHRR.HBRR.arrayDat - UHRR and HBRR Illumina BeadArray data
- UHRR.HBRR.countDat - UHRR and HBRR RNA-Seq Illumina count data
- UHRR.HBRR.totalReads - UHRR and HBRR sample total read data
On BioConductor:erccdashboard-1.47.0(bioc 3.24)erccdashboard-1.46.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologygeneexpressiontranscriptionalternativesplicingdifferentialexpressiondifferentialsplicinggeneticsmicroarraymrnamicroarrayrnaseqbatcheffectmultiplecomparisonqualitycontrol
Last updated from:c93edb5942 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 169 | ||
| linux-devel-x86_64 | NOTE | 184 | ||
| source / vignettes | OK | 237 | ||
| linux-release-x86_64 | NOTE | 195 | ||
| macos-release-arm64 | NOTE | 234 | ||
| macos-oldrel-arm64 | NOTE | 103 | ||
| windows-devel | NOTE | 145 | ||
| windows-release | NOTE | 107 | ||
| windows-oldrel | NOTE | 117 | ||
| wasm-release | OK | 118 |
Exports:annotLODRdynRangePloterccROCest_r_mestLODRgeneExprTestinitDatmaSignalrunDashboardsaveERCCPlots
Dependencies:bitopscaToolsclicpp11edgeRevaluatefarverggplot2gluegplotsgridExtragtablegtoolshighrisobandKernSmoothknitrlabelinglatticelifecyclelimmalocfitmagrittrMASSplyrqvalueR6RColorBrewerRcppreshape2rlangROCRS7scalesstatmodstringistringrvctrsviridisLitewithrxfunyaml
