Package: esetVis 1.38.0

Laure Cougnaud

esetVis: Visualizations of expressionSet Bioconductor object

Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.

Authors:Laure Cougnaud <[email protected]>

esetVis_1.38.0.tar.gz
esetVis_1.38.0.zip(r-4.7)esetVis_1.38.0.zip(r-4.6)esetVis_1.38.0.zip(r-4.5)
esetVis_1.38.0.tgz(r-4.6-any)esetVis_1.38.0.tgz(r-4.5-any)
esetVis_1.38.0.tar.gz(r-4.7-any)esetVis_1.38.0.tar.gz(r-4.6-any)
esetVis_1.38.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
esetVis/json (API)
NEWS

# Install 'esetVis' in R:

install.packages('esetVis', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:esetVis-1.39.0(bioc 3.24)esetVis-1.38.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

visualization datarepresentation dimensionreduction principalcomponent pathways

3.30 score 7 scripts 421 downloads 11 exports 47 dependencies

Last updated from:2af516f698 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

Target	Result	Time
bioc-checks	ERROR	218
linux-devel-x86_64	NOTE	370
source / vignettes	OK	308
linux-release-x86_64	NOTE	309
macos-release-arm64	NOTE	189
macos-oldrel-arm64	NOTE	165
windows-devel	NOTE	224
windows-release	NOTE	218
windows-oldrel	NOTE	278
wasm-release	OK	159

Exports:esetLda esetPlot esetPlotInteractive esetPlotWrapper esetSpectralMap esetTsne getGeneSetsForPlot ggplotEsetPlot ggvisEsetPlot plotEset plotlyEsetPlot

Dependencies:AnnotationDbi askpass Biobase BiocGenerics Biostrings bit bit64 bitops blob cachem caTools cli cpp11 crayon curl DBI fastmap generics glue gplots gtools hexbin httr IRanges jsonlite KEGGREST KernSmooth lattice lifecycle MASS memoise mime MLP mpm openssl pkgconfig png R6 Rcpp rlang RSQLite Rtsne S4Vectors Seqinfo sys vctrs XVector

Vignette of the esetVis package

Laure Cougnaud

Rendered fromesetVis-vignette.Rmdusingknitr::rmarkdownon May 24 2026.

Last update: 2024-01-02
Started: 2016-06-18

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
plot a biplot of a linear discriminant analysis of an eSet object	esetLda
wrapper for biplot of features/samples contained in a eSet object	esetPlotWrapper
plot a spectral map biplot of an eSet.	esetSpectralMap
plot a t-SNE of an eSet object	esetTsne
get gene sets for plot of eSet object.	getGeneSetsForPlot
a S4 class to represent 'ggplot' plots	ggplotEsetPlot ggplotEsetPlot-class