Package: ewceData 1.20.0

Hiranyamaya Dash

ewceData: The ewceData package provides reference data required for ewce

This package provides reference data required for ewce. Expression Weighted Celltype Enrichment (EWCE) is used to determine which cell types are enriched within gene lists. The package provides tools for testing enrichments within simple gene lists (such as human disease associated genes) and those resulting from differential expression studies. The package does not depend upon any particular Single Cell Transcriptome dataset and user defined datasets can be loaded in and used in the analyses.

Authors:Alan Murphy [aut], Hiranyamaya Dash [cre], Nathan Skene [aut]

ewceData_1.20.0.tar.gz
ewceData_1.20.0.tar.gz(r-4.7-any)ewceData_1.20.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ewceData/json (API)

# Install 'ewceData' in R:

install.packages('ewceData', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/neurogenomics/ewcedata/issues

On BioConductor:ewceData-1.21.0(data/experiment 3.24)ewceData-1.20.0(data/experiment 3.23)

experimentdata experimenthub expressiondata genome proteome microarraydata sequencingdata singlecelldata rnaseqdata datapkg

5.97 score 1 packages 62 scripts 19 exports 57 dependencies

Last updated from:4d8e2fbea4 (on RELEASE_3_23). Checks:1 WARNING, 2 NOTE, 1 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	WARNING	157
linux-devel	NOTE	309
source / vignettes	OK	256
linux-release	NOTE	272

Exports:all_hgnc all_hgnc_wtEnsembl all_mgi all_mgi_wtEnsembl alzh_gwas_top100 cortex_mrna ctd ensembl_transcript_lengths_GCcontent example_genelist hpsd_genes hypothalamus_mrna id_genes mgi_synonym_data mouse_to_human_homologs rbfox_genes schiz_genes tt_alzh tt_alzh_BA36 tt_alzh_BA44

Dependencies:AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr dplyr ExperimentHub fastmap filelock generics glue httr httr2 IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Vectors Seqinfo stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

Data package for Expression Weighted Celltype Enrichment EWCE

Citation | Overview | Data | References

Rendered fromewceData.Rmdusingknitr::knitr

Last update: 2025-10-28
Started: 2021-02-16

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
all_hgnc	all_hgnc
all_hgnc_wtEnsembl	all_hgnc_wtEnsembl
all_mgi	all_mgi
all_mgi_wtEnsembl	all_mgi_wtEnsembl
alzh_gwas_top100	alzh_gwas_top100
cortex_mrna	cortex_mrna
ctd	ctd
ensembl_transcript_lengths_GCcontent	ensembl_transcript_lengths_GCcontent
The ewceData package provides reference data required for ewce	ewceData-package ewceData
example_genelist	example_genelist
hpsd_genes	hpsd_genes
hypothalamus_mrna	hypothalamus_mrna
id_genes	id_genes
mgi_synonym_data	mgi_synonym_data
mouse_to_human_homologs	mouse_to_human_homologs
rbfox_genes	rbfox_genes
schiz_genes	schiz_genes
tt_alzh	tt_alzh
tt_alzh_BA36	tt_alzh_BA36
tt_alzh_BA44	tt_alzh_BA44