Package: fCCAC 1.38.0

Pedro Madrigal

fCCAC: functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets

Computational evaluation of variability across DNA or RNA sequencing datasets is a crucial step in genomics, as it allows both to evaluate reproducibility of replicates, and to compare different datasets to identify potential correlations. fCCAC applies functional Canonical Correlation Analysis to allow the assessment of: (i) reproducibility of biological or technical replicates, analyzing their shared covariance in higher order components; and (ii) the associations between different datasets. fCCAC represents a more sophisticated approach that complements Pearson correlation of genomic coverage.

Authors:Pedro Madrigal [aut, cre]

fCCAC_1.38.0.tar.gz
fCCAC_1.38.0.zip(r-4.7)fCCAC_1.38.0.zip(r-4.6)fCCAC_1.38.0.zip(r-4.5)
fCCAC_1.38.0.tgz(r-4.6-any)fCCAC_1.38.0.tgz(r-4.5-any)
fCCAC_1.38.0.tar.gz(r-4.7-any)fCCAC_1.38.0.tar.gz(r-4.6-any)
fCCAC_1.38.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
fCCAC/json (API)
NEWS

# Install 'fCCAC' in R:
install.packages('fCCAC', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pmb59/fccac/issues

On BioConductor:fCCAC-1.39.0(bioc 3.24)fCCAC-1.38.0(bioc 3.23)

epigeneticstranscriptionsequencingcoveragechipseqfunctionalgenomicsrnaseqatacseqmnaseseqbioc-devel

4.60 score 1 scripts 416 downloads 1 mentions 3 exports 122 dependencies

Last updated from:5e50dd8a5d (on RELEASE_3_23). Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING212
linux-devel-x86_64NOTE441
source / vignettesOK339
linux-release-x86_64NOTE431
macos-release-arm64NOTE281
macos-oldrel-arm64NOTE283
windows-develNOTE308
windows-releaseNOTE309
windows-oldrelNOTE281
wasm-releaseOK167

Exports:fccacheatmapfCCACmultiplot

Dependencies:abindashaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsBSgenomecigarillocirclizeclicliprclueclustercodetoolscolorspaceComplexHeatmapcpp11crayoncurldata.tableDelayedArraydeSolvedigestdoParallelfarverfdafdsFNNforeachformatRfutile.loggerfutile.optionsgenericsgenomationGenomicAlignmentsGenomicRangesGetoptLongggplot2GlobalOptionsgluegridBasegtablehdrcdehmshttrimputeIRangesisobanditeratorsjsonlitekernlabKernSmoothkslabelinglambda.rlatticelifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmgcvmimemulticoolmvtnormnlmeopensslpcaPPpillarpkgconfigplotrixplyrpngpracmaprettyunitsprogressR6rainbowRColorBrewerRcppRCurlreadrreshape2restfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsS7scalesSeqinfoseqPatternshapesnowSparseArraystringistringrSummarizedExperimentsystibbletidyselecttzdbutf8vctrsviridisLitevroomwithrXMLXVectoryaml

fCCAC Vignette

Rendered fromfCCAC.Rnwusingutils::Sweaveon Jun 09 2026.

Last update: 2021-09-06
Started: 2016-10-17