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cff-version: 1.2.0
message: 'To cite package "famat" in publications use:'
type: software
license: GPL-3.0-only
title: 'famat: Functional analysis of metabolic and transcriptomic data'
version: 1.22.0
doi: 10.32614/CRAN.package.famat
abstract: 'Famat is made to collect data about lists of genes and metabolites provided
  by user, and to visualize it through a Shiny app. Information collected is: - Pathways
  containing some of the user''s genes and metabolites (obtained using a pathway enrichment
  analysis). - Direct interactions between user''s elements inside pathways. - Information
  about elements (their identifiers and descriptions). - Go terms enrichment analysis
  performed on user''s genes. The Shiny app is composed of: - information about genes,
  metabolites, and direct interactions between them inside pathways. - an heatmap
  showing which elements from the list are in pathways (pathways are structured in
  hierarchies). - hierarchies of enriched go terms using Molecular Function and Biological
  Process.'
authors:
- family-names: Charles
  given-names: Mathieu
  email: mathieu.charles@inrae.fr
  orcid: https://orcid.org/0000-0001-5343-6324
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/emiliesecherre/famat
commit: df289f03a0a89f3d8d872a0ebe24519d1fc508a4
url: https://github.com/emiliesecherre/famat
date-released: '2026-04-28'
contact:
- family-names: Charles
  given-names: Mathieu
  email: mathieu.charles@inrae.fr
  orcid: https://orcid.org/0000-0001-5343-6324