Package: fastLiquidAssociation 1.48.0

Tina Gunderson

fastLiquidAssociation: functions for genome-wide application of Liquid Association

This package extends the function of the LiquidAssociation package for genome-wide application. It integrates a screening method into the LA analysis to reduce the number of triplets to be examined for a high LA value and provides code for use in subsequent significance analyses.

Authors:Tina Gunderson

fastLiquidAssociation_1.48.0.tar.gz
fastLiquidAssociation_1.48.0.zip(r-4.7)fastLiquidAssociation_1.48.0.zip(r-4.6)fastLiquidAssociation_1.48.0.zip(r-4.5)
fastLiquidAssociation_1.48.0.tgz(r-4.6-any)fastLiquidAssociation_1.48.0.tgz(r-4.5-any)
fastLiquidAssociation_1.48.0.tar.gz(r-4.7-any)fastLiquidAssociation_1.48.0.tar.gz(r-4.6-any)
fastLiquidAssociation_1.48.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
fastLiquidAssociation/json (API)

# Install 'fastLiquidAssociation' in R:
install.packages('fastLiquidAssociation', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • testmat - Example results from fastMLA requiring all significance methods

On BioConductor:fastLiquidAssociation-1.49.0(bioc 3.24)fastLiquidAssociation-1.48.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwaregeneexpressiongeneticspathwayscellbiology

3.30 score 3 scripts 372 downloads 1 mentions 3 exports 105 dependencies

Last updated from:fc7119479f (on RELEASE_3_23). Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR224
linux-devel-x86_64WARNING377
source / vignettesOK336
linux-release-x86_64WARNING503
macos-release-arm64WARNING261
macos-oldrel-arm64WARNING180
windows-develWARNING231
windows-releaseWARNING245
windows-oldrelWARNING237
wasm-releaseOK208

Exports:fastboots.GLAfastMLAmass.CNM

Dependencies:AnnotationDbiaskpassbackportsbase64encBiobaseBiocGenericsBiostringsbitbit64blobbroombslibcachemcheckmatecliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIdigestdoParalleldplyrdynamicTreeCutevaluatefarverfastclusterfastmapfontawesomeforeachforeignFormulafsgeepackgenericsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrimputeIRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglatticelifecycleLiquidAssociationmagrittrMASSMatrixmatrixStatsmemoisemimennetopensslorg.Sc.sgd.dbpillarpkgconfigpngpreprocessCorepurrrR6rappdirsRColorBrewerRcpprlangrmarkdownrpartRSQLiterstudioapiS4VectorsS7sassscalesSeqinfostringistringrsurvivalsystibbletidyrtidyselecttinytexutf8vctrsviridisLiteWGCNAwithrxfunXVectoryamlyeastCC

fastLiquidAssociation Vignette

Rendered fromfastLiquidAssociation.Rnwusingutils::Sweaveon May 31 2026.

Last update: 2017-10-23
Started: 2014-04-11

Readme and manuals

Help Manual

Help pageTopics
Functions to extend liquid association (LA) analysis for genome-wide usefastLiquidAssociation-package fastLiquidAssociation
Function to parallelize bootstrapping for MLA robust estimates.fastboots.GLA fastboots.GLA,ANY,matrix-method fastboots.GLA-class fastboots.GLA-methods
Function to more efficiently screen for gene triplets for those with a high liquid association value.fastMLA fastMLA,matrix-method fastMLA-class fastMLA-methods
Function to obtain CNM significance estimates from an object result of fastMLA.mass.CNM mass.CNM,matrix,data.frame-method mass.CNM-class mass.CNM-methods
Example results from fastMLA requiring all significance methodstestmat