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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "fastreeR" in publications use:'
type: software
license: GPL-3.0-only
title: 'fastreeR: Phylogenetic, Distance and Other Calculations on VCF and Fasta Files'
version: 2.2.0
doi: 10.1186/s12859-016-1186-3
identifiers:
- type: doi
  value: 10.32614/CRAN.package.fastreeR
abstract: Calculate distances, build phylogenetic trees or perform hierarchical clustering
  between the samples of a VCF or FASTA file. Functions are implemented in Java-11
  and called via rJava. Parallel implementation that operates directly on the VCF
  or FASTA file for fast execution.
authors:
- family-names: Gkanogiannis
  given-names: Anestis
  email: anestis@gkanogiannis.com
  orcid: https://orcid.org/0000-0002-6441-0688
preferred-citation:
  type: article
  title: A scalable assembly-free variable selection algorithm for biomarker discovery
    from metagenomes
  authors:
  - family-names: Gkanogiannis
    given-names: Anestis
    email: anestis@gkanogiannis.com
    orcid: https://orcid.org/0000-0002-6441-0688
  - family-names: Bruls
    given-names: Thomas
  journal: BMC Bioinformatics
  year: '2016'
  volume: Aug 19;17(1):311
  doi: 10.1186/s12859-016-1186-3
  url: https://dx.doi.org/10.1186/s12859-016-1186-3
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/gkanogiannis/fastreeR
commit: 0cfd997adf8505069925a2d32cdc78ca3ad64fc0
url: https://github.com/gkanogiannis/BioInfoJava-Utils
date-released: '2026-04-28'
contact:
- family-names: Gkanogiannis
  given-names: Anestis
  email: anestis@gkanogiannis.com
  orcid: https://orcid.org/0000-0002-6441-0688