Package: fgga 1.20.0

Flavio Spetale

fgga: Hierarchical ensemble method based on factor graph

Package that implements the FGGA algorithm. This package provides a hierarchical ensemble method based ob factor graphs for the consistent cross-ontology annotation of protein coding genes. FGGA embodies elements of predicate logic, communication theory, supervised learning and inference in graphical models.

Authors:Flavio Spetale [aut, cre]

fgga_1.20.0.tar.gz
fgga_1.20.0.zip(r-4.7)fgga_1.20.0.zip(r-4.6)fgga_1.20.0.zip(r-4.5)
fgga_1.20.0.tgz(r-4.6-any)fgga_1.20.0.tgz(r-4.5-any)
fgga_1.20.0.tar.gz(r-4.7-any)fgga_1.20.0.tar.gz(r-4.6-any)
fgga_1.20.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
fgga/json (API)
NEWS

# Install 'fgga' in R:
install.packages('fgga', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fspetale/fgga/issues

Datasets:
  • CfData - A set of characterized protein coding genes from the Cannis familiaris organism annotated to a target GO subgraph considering both experimental and electronic evidence.

On BioConductor:fgga-1.21.0(bioc 3.24)fgga-1.20.0(bioc 3.23)

softwarestatisticalmethodclassificationnetworknetworkinferencesupportvectormachinegraphandnetworkgo

4.48 score 3 stars 7 scripts 320 downloads 13 exports 53 dependencies

Last updated from:83eb1c4369 (on RELEASE_3_23). Checks:1 NOTE, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE549
linux-devel-x86_64OK246
source / vignettesOK258
linux-release-x86_64OK275
macos-release-arm64OK209
macos-oldrel-arm64OK154
windows-develOK183
windows-releaseOK227
windows-oldrelOK171
wasm-releaseOK152

Exports:createFoldsfggafgga2bipartitefHierarchicalMeasuresfMeasuresfMeasuresByLevelmaxDistancegraphOntomsgFGGApreCoreFGsvmOntosvmTraintableTPGvarianceOnto

Dependencies:askpassBHBiocFileCacheBiocGenericsbitbit64blobcachemclassclicpp11curlDBIdbplyrdplyre1071fastmapfilelockgenericsgluegraphgRbasehttr2igraphjsonlitelatticelifecyclemagrittrMASSMatrixmemoiseopensslpillarpkgconfigproxypurrrR6rappdirsRBGLRcppRcppArmadilloRcppEigenrlangRSQLitestringistringrsystibbletidyrtidyselectutf8vctrswithr

FGGA: Factor Graph GO Annotation

F.E. Spetale, E. Tapia

Rendered fromfgga.Rmdusingknitr::rmarkdownon Jun 11 2026.

Last update: 2022-08-17
Started: 2021-04-26